Tubb3-ps1 Pseudogene Detail

Summary

• Symbol
  Tubb3-ps1
• Name
  tubulin, beta 3 class III, pseudogene 1
• Synonyms
  EG545887, Gm19444

• Feature Type
  pseudogene
• IDs
  MGI:3723459
  NCBI Gene: 100502903
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr6:136375424-136377133 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 66.48 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  198 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3723459	pseudogene	Chr6:136375424-136377133 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Sequences &
Gene Models

• All Sequences
  5
• RefSeq
  2

• NCBI Gene
  100502903

Representative Sequences			Length	Strain/Species
genomic	100502903	NCBI Gene Model | MGI Sequence Detail	1710	C57BL/6J
transcript	OR924303	GenBank | ENA | DDBJ | MGI Sequence Detail	1479	C57BL/6JRj/6*

Other
Accession IDs

MGI:3648675, MGI:5011629

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:90438 Mouse Genome Informatics Scientific Curators, Obtaining and loading genome assembly coordinates from NCBI annotations. 2005;

TSS for Tubb3-ps1:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr59309	Chr6:136375420-136375423 (+)	-2 bp