Vmn2r-ps60 Pseudogene Detail

Summary

• Symbol
  Vmn2r-ps60
• Name
  vomeronasal 2, receptor, pseudogene 60
• Synonyms
  Casr-rs4, Gprc2a-rs4

• Feature Type
  pseudogene
• IDs
  MGI:3757993
  NCBI Gene: 628490
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr7:42079529-42079793 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 28.25 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  112 from dbSNP Build 142
• Strain Annotations
  8

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3757993	pseudogene	Chr7:42079252-42080148 (-)
129S1/SvImJ	no annotation
A/J	MGP_AJ_G0040562	pseudogene	Chr7:41406201-41407097 (-)
AKR/J	MGP_AKRJ_G0040488	pseudogene	Chr7:42570124-42571020 (-)
BALB/cJ	no annotation
C3H/HeJ	MGP_C3HHeJ_G0040191	pseudogene	Chr7:43237365-43238267 (-)
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	MGP_DBA2J_G0040366	pseudogene	Chr7:41225596-41226554 (-)
FVB/NJ	MGP_FVBNJ_G0040304	pseudogene	Chr7:40955502-40956398 (-)
LP/J	no annotation
NOD/ShiLtJ	MGP_NODShiLtJ_G0040296	pseudogene	Chr7:44758745-44759641 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0041279	pseudogene	Chr7:41820581-41822552 (-)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Vmn2r-ps60
  

Expression

• Assay Results
  709
• Tissues
  3
• cDNA Data
  1
• Literature Summary
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  14
• RefSeq
  2

• Ensembl
  ENSMUSG00000070621 (Evidence)
• NCBI Gene
  628490

Representative Sequences			Length	Strain/Species
genomic	628490	NCBI Gene Model | MGI Sequence Detail	265	C57BL/6J
transcript	NR_028441	RefSeq | MGI Sequence Detail	265	Not Specified

Molecular
Reagents

• All nucleic 2

  cDNA 1

  Primer pair 1

  
  

  Microarray probesets 1

Other
Accession IDs

MGI:1101769, MGI:1351349

References

• Summaries
  All 10

  Developmental Gene Expression 1
• Earliest
  J:29900 Ho C, et al., A mouse model of human familial hypocalciuric hypercalcemia and neonatal severe hyperparathyroidism [see comments]. Nat Genet. 1995 Dec;11(4):389-94
• Latest
  J:125082 Young JM, et al., V2R gene families degenerated in primates, dog and cow, but expanded in opossum. Trends Genet. 2007 May;23(5):212-5

TSS for Vmn2r-ps60:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr2207	Chr7:42080074-42080076 (-)	-282 bp