Vmn2r-ps79 Pseudogene Detail

Summary

• Symbol
  Vmn2r-ps79
• Name
  vomeronasal 2, receptor, pseudogene 79

• Feature Type
  pseudogene
• IDs
  MGI:3761324
  NCBI Gene: 100124569
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr7:85616248-85616472 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 48.43 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  164 from dbSNP Build 142
• Strain Annotations
  9

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3761324	pseudogene	Chr7:85616224-85616600 (+)
129S1/SvImJ	no annotation
A/J	MGP_AJ_G0040620	pseudogene	Chr7:86131988-86132364 (+)
AKR/J	MGP_AKRJ_G0040550	pseudogene	Chr7:88148471-88148847 (+)
BALB/cJ	MGP_BALBcJ_G0040611	pseudogene	Chr7:85777582-85777958 (+)
C3H/HeJ	MGP_C3HHeJ_G0040248	pseudogene	Chr7:88565395-88565771 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0041303	pseudogene	Chr7:91735217-91735593 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0040215	pseudogene	Chr7:94737784-94738160 (+)
DBA/2J	MGP_DBA2J_G0040427	pseudogene	Chr7:84597907-84598283 (+)
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	MGP_NZOHlLtJ_G0041354	pseudogene	Chr7:87433516-87433892 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Vmn2r-ps79
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  24 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  1
• Radiation induced
  3
• Genomic Mutations
  4 involving Vmn2r-ps79
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  13
• RefSeq
  1

• Ensembl
  ENSMUSG00000092263 (Evidence)
• NCBI Gene
  100124569

Representative Sequences			Length	Strain/Species
genomic	100124569	NCBI Gene Model | MGI Sequence Detail	225	C57BL/6J

References

• Summaries
  All 28

  Phenotypes 24
• Earliest
  J:141526 Russell LB, et al., Analysis of the albino-locus region of the mouse. III. Time of death of prenatal lethals. Genetics. 1979 May;92(1):205-13
• Latest
  J:125082 Young JM, et al., V2R gene families degenerated in primates, dog and cow, but expanded in opossum. Trends Genet. 2007 May;23(5):212-5