Vmn2r-ps104 Pseudogene Detail

Summary

• Symbol
  Vmn2r-ps104
• Name
  vomeronasal 2, receptor, pseudogene 104

• Feature Type
  pseudogene
• IDs
  MGI:3761523
  NCBI Gene: 100041915
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr13:66499373-66503856 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, 34.52 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  3 from dbSNP Build 142
• Strain Annotations
  5

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3761523	pseudogene	Chr13:66499213-66504806 (-)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	MGP_CAROLIEiJ_G0027534	protein coding gene	Chr5:101678653-101682289 (-)
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	MGP_FVBNJ_G0029640	protein coding gene	Chr5:105875581-105880757 (-)
LP/J	no annotation
NOD/ShiLtJ	MGP_NODShiLtJ_G0029671	protein coding gene	Chr5:124892265-124904037 (-)
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	MGP_SPRETEiJ_G0016842	protein coding gene	Chr10:131819628-131823030 (-)
WSB/EiJ	no annotation

Homology

• Gene Tree
  Vmn2r-ps104
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Vmn2r-ps104
• Find Mice (IMSR)
  5 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  10
• RefSeq
  1

• Ensembl
  ENSMUSG00000094499 (Evidence)
• NCBI Gene
  100041915

Representative Sequences			Length	Strain/Species
genomic	100041915	NCBI Gene Model | MGI Sequence Detail	4484	C57BL/6J
transcript	AK049221	GenBank | ENA | DDBJ | MGI Sequence Detail	3031	C57BL/6J

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 8

  Phenotypes 3
• Earliest
  J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69
• Latest
  J:125082 Young JM, et al., V2R gene families degenerated in primates, dog and cow, but expanded in opossum. Trends Genet. 2007 May;23(5):212-5