Vmn2r-ps126 Pseudogene Detail

Summary

• Symbol
  Vmn2r-ps126
• Name
  vomeronasal 2, receptor, pseudogene 126

• Feature Type
  pseudogene
• IDs
  MGI:3761612
  NCBI Gene: 100125268
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr17:20300227-20302563 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, 11.40 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  248 from dbSNP Build 142
• Strain Annotations
  15

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3761612	pseudogene	Chr17:20300210-20361673 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0040115	pseudogene	Chr17:16092844-18797452 (+)
A/J	MGP_AJ_G0040123	pseudogene	Chr17:17973389-18033364 (+)
AKR/J	MGP_AKRJ_G0040048	pseudogene	Chr17:18018138-18081220 (+)
BALB/cJ	MGP_BALBcJ_G0040104	pseudogene	Chr17:18132190-18201800 (+)
C3H/HeJ	MGP_C3HHeJ_G0039757	pseudogene	Chr17:18390415-18448822 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0040699	pseudogene	Chr17:19302821-19375367 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0038837	pseudogene	Chr17:16020709-16022351 (-)
CBA/J	MGP_CBAJ_G0039723	pseudogene	Chr17:20035920-20095558 (+)
DBA/2J	MGP_DBA2J_G0039915	pseudogene	Chr17:17661345-17720368 (+)
FVB/NJ	MGP_FVBNJ_G0039865	pseudogene	Chr17:15243909-17482794 (+)
LP/J	MGP_LPJ_G0039956	pseudogene	Chr17:16054628-18743849 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0039853	pseudogene	Chr17:17091965-19850793 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0040792	pseudogene	Chr17:18324927-18388764 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0039064	pseudogene	Chr17:16333438-18573429 (+)

Homology

• Gene Tree
  Vmn2r-ps126
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  16 phenotype references
  

• All Mutations and Alleles
  1
• Spontaneous
  1
• Genomic Mutations
  1 involving Vmn2r-ps126
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19
• RefSeq
  1

• Ensembl
  ENSMUSG00000093401 (Evidence)
• NCBI Gene
  100125268

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000093401	Ensembl Gene Model | MGI Sequence Detail	2337	C57BL/6J
transcript	ENSMUST00000176711	Ensembl | MGI Sequence Detail	1310	Not Applicable

References

• Summaries
  All 20

  Phenotypes 16
• Earliest
  J:84774 Dunn LC, Studies of the genetic variability in populations of wild house mice. II. Analysis of eight additional alleles at locus T. Genetics. 1957;42:299-311
• Latest
  J:273736 Charron Y, et al., Two isoforms of the RAC-specific guanine nucleotide exchange factor TIAM2 act oppositely on transmission ratio distortion by the mouse t-haplotype. PLoS Genet. 2019 Feb;15(2):e1007964