Snhg1 MGI Mouse Gene Detail - MGI:3763743 - small nucleolar RNA host gene 1

Symbol

Snhg1
Name

small nucleolar RNA host gene 1

Feature Type

lncRNA gene
IDs

MGI:3763743
NCBI Gene: 83673
Alliance

gene page
Transcription Start Sites

3 TSS

Sequence Map

Chr19:8700851-8703690 bp, + strand
From NCBI annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

Genetic Map

Chromosome 19, 5.44 cM

SNPs within 2kb

191 from dbSNP Build 142
Strain Annotations

18

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3763743	lncRNA gene	Chr19:8700801-8703811 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015380	unclassified non-coding RNA gene	Chr19:5991902-5994876 (+)
A/J	MGP_AJ_G0015354	unclassified non-coding RNA gene	Chr19:5675185-5678139 (+)
AKR/J	MGP_AKRJ_G0015318	unclassified non-coding RNA gene	Chr19:5761238-5764206 (+)
BALB/cJ	MGP_BALBcJ_G0015318	unclassified non-coding RNA gene	Chr19:5777347-5780918 (+)
C3H/HeJ	MGP_C3HHeJ_G0015142	unclassified non-coding RNA gene	Chr19:5844528-5847492 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0015772	unclassified non-coding RNA gene	Chr19:6112168-6115169 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013513	unclassified non-coding RNA gene	Chr19:5915731-5918673 (+)
CAST/EiJ	MGP_CASTEiJ_G0014693	unclassified non-coding RNA gene	Chr19:5492331-5495300 (+)
CBA/J	MGP_CBAJ_G0015121	unclassified non-coding RNA gene	Chr19:6224800-6227758 (+)
DBA/2J	MGP_DBA2J_G0015216	unclassified non-coding RNA gene	Chr19:5505290-5508248 (+)
FVB/NJ	MGP_FVBNJ_G0015223	unclassified non-coding RNA gene	Chr19:5580997-5583960 (+)
LP/J	MGP_LPJ_G0015296	unclassified non-coding RNA gene	Chr19:5883077-5886603 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015249	unclassified non-coding RNA gene	Chr19:6100218-6103188 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015811	unclassified non-coding RNA gene	Chr19:5804649-5807592 (+)
PWK/PhJ	MGP_PWKPhJ_G0014483	unclassified non-coding RNA gene	Chr19:5170774-5173785 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014270	unclassified non-coding RNA gene	Chr19:5404365-5407280 (+)
WSB/EiJ	MGP_WSBEiJ_G0014800	unclassified non-coding RNA gene	Chr19:5769728-5773566 (+)

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Gene Tree

Snhg1

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Phenotype Summary

5 phenotype references

All Mutations and Alleles

118
Gene trapped

118
Find Mice (IMSR)

56 strains or lines available

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All GO Annotations

1
GO References

1

Molecular Function

carbohydrate derivative binding	cytoskeletal protein binding	DNA binding	enzyme regulator	hydrolase	ligase	lipid binding	oxidoreductase	RNA binding	signaling receptor activity	signaling receptor binding	transcription	transferase	transporter

Biological Process

carbohydrate derivative metabolism	cell differentiation	cell population proliferation	cellular component organization	DNA-templated transcription	establishment of localization	homeostatic process	immune system process	lipid metabolic process	programmed cell death	protein metabolic process	response to stimulus	signaling	system development

Cellular Component

cell projection	cytoplasmic vesicle	cytoskeleton	cytosol	endoplasmic reticulum	endosome	extracellular region	Golgi apparatus	mitochondrion	membraneless organelle	nucleus	organelle envelope	organelle lumen	plasma membrane	protein-containing complex	synapse	vacuole

Click cells to view annotations.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

Assay Results

748
Tissues

38
cDNA Data

85
Literature Summary

4

Images

Tissue x Stage Matrix

Other Mouse Links

GEO

Expression Atlas

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All Sequences

57
RefSeq

1

Ensembl

ENSMUSG00000108414 (Evidence)
NCBI Gene

83673

Representative Sequences				Length	Strain/Species	Flank
	genomic	83673	NCBI Gene Model \| MGI Sequence Detail	2840	C57BL/6J	± kb
	transcript	NR_002896	RefSeq \| MGI Sequence Detail	476	C57BL/6

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All nucleic 85

cDNA 85

Microarray probesets 7

Summaries

All 21

Developmental Gene Expression 4

Gene Ontology 1

Phenotypes 5
Earliest

J:49278 Tycowski KT, et al., A mammalian gene with introns instead of exons generating stable RNA products [see comments]. Nature. 1996 Feb 1;379(6564):464-6
Latest

J:312381 Li M, et al., LncRNA Snhg1-driven self-reinforcing regulatory network promoted cardiac regeneration and repair after myocardial infarction. Theranostics. 2021;11(19):9397-9414

TSS for Snhg1:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr154799	Chr19:8700308-8700326 (+)	-534 bp
Tssr5432	Chr19:8700336-8700350 (+)	-508 bp
Tssr154800	Chr19:8700842-8700878 (+)	9 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources Funding Information Warranty Disclaimer, Privacy Notice, Licensing, & Copyright Send questions and comments to User Support.	last database update 11/19/2024 MGI 6.24