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Bpifb9a Gene Detail
Summary
  • Symbol
    Bpifb9a
  • Name
    BPI fold containing family B, member 9A
  • Synonyms
    4833413D08Rik, vomeromodulin
  • Feature Type
    protein coding gene
  • IDs
    MGI:3767993
    NCBI Gene: 71425
  • Alliance
    gene page
Location &
Maps
more
  • Sequence Map
    Chr2:154099774-154113165 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 2, 76.34 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    355 from dbSNP Build 142
  • Strain Annotations
    16
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3767993
 protein coding gene Chr2:154099774-154113165 (+)
129S1/SvImJ no annotation
A/J MGP_AJ_G0026677
 protein coding gene Chr2:152608819-152672860 (+)
AKR/J MGP_AKRJ_G0026648
 protein coding gene Chr2:157135361-157149481 (+)
BALB/cJ MGP_BALBcJ_G0026687
 protein coding gene Chr2:152932844-152945514 (+)
C3H/HeJ MGP_C3HHeJ_G0026429
 protein coding gene Chr2:157441482-157459653 (+)
C57BL/6NJ MGP_C57BL6NJ_G0027136
 protein coding gene Chr2:163609559-163638048 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0024506
 protein coding gene Chr2:146193066-146242376 (+)
CAST/EiJ MGP_CASTEiJ_G0025891
 protein coding gene Chr2:157811973-157826889 (-)
CBA/J no annotation
DBA/2J MGP_DBA2J_G0026543
 protein coding gene Chr2:151892919-151908312 (+)
FVB/NJ MGP_FVBNJ_G0026509
 protein coding gene Chr2:150258841-150272580 (+)
LP/J MGP_LPJ_G0026648
 protein coding gene Chr2:159131780-159158028 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0026531
 protein coding gene Chr2:173625828-173700124 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0027191
 protein coding gene Chr2:157007167-157023679 (+)
PWK/PhJ MGP_PWKPhJ_G0025624
 protein coding gene Chr2:151406953-151420374 (+)
SPRET/EiJ MGP_SPRETEiJ_G0025427
 protein coding gene Chr2:155904345-155917250 (-)
WSB/EiJ MGP_WSBEiJ_G0025960
 protein coding gene Chr2:157867244-157879355 (+)



Homology
more
  • Human Ortholog
    BPIFB9P, BPI fold containing family B member 9, pseudogene
  • Vertebrate Orthologs
    2
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    BPIFB9P, BPI fold containing family B member 9, pseudogene
  • Synonyms
    C20orf115, dJ1187J4.2, dJ1187J4.3
  • Links
    NCBI Gene ID: 402016

  • Chr Location
    20q11.21
Mutations,
Alleles, and
Phenotypes
less
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    3
  • GO References
    2
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    68
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 71425 NCBI Gene Model | MGI Sequence Detail 13392 C57BL/6J ±  kb
transcript NM_175167 RefSeq | MGI Sequence Detail 2065 C57BL/6  
polypeptide Q80XI7 UniProt | EBI | MGI Sequence Detail 591 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • InterPro Domains
    IPR017942 Lipid-binding serum glycoprotein, N-terminal
    IPR034433 Vomeromodulin
  • GlyGen
    Q80XI7 6 sites, 5 N-linked glycans (5 sites)
Molecular
Reagents
less
  • All nucleic 68
    cDNA 68

    Microarray probesets 1
References
more
  • Summaries
    All 16
    Gene Ontology 2
  • Earliest
    J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
  • Latest
    J:174122 Bingle CD, et al., Systematic nomenclature for the PLUNC/PSP/BSP30/SMGB proteins as a subfamily of the BPI fold-containing superfamily. Biochem Soc Trans. 2011 Aug 1;39(4):977-83
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory