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Rhox3d-ps Pseudogene Detail
Summary
  • Symbol
    Rhox3d-ps
  • Name
    reproductive homeobox 3D, pseudogene
  • Synonyms
    OTTMUSG00000017145, Rhox3.4, Rhox3d, Rhox3-ps
  • Feature Type
    pseudogene
  • IDs
    MGI:3770270
    NCBI Gene: 546295
  • Member of
    Rhox cluster
  • Alliance
    gene page
Location &
Maps
more
  • Sequence Map
    ChrX:36685497-36689459 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome X, 21.80 cM
Strain
Comparison
more
  • SNPs within 2kb
    39 from dbSNP Build 142
  • Strain Annotations
    5
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3770270
 pseudogene ChrX:36685136-36689460 (+)
129S1/SvImJ no annotation
A/J no annotation
AKR/J no annotation
BALB/cJ MGP_BALBcJ_G0040663
 pseudogene ChrX:32118801-32127430 (+)
C3H/HeJ no annotation
C57BL/6NJ no annotation
CAROLI/EiJ no annotation
CAST/EiJ no annotation
CBA/J no annotation
DBA/2J MGP_DBA2J_G0040480
 pseudogene ChrX:32554493-32559253 (-)
FVB/NJ no annotation
LP/J MGP_LPJ_G0040518
 pseudogene ChrX:32873070-32877271 (+)
NOD/ShiLtJ no annotation
NZO/HlLtJ MGP_NZOHlLtJ_G0041409
 pseudogene ChrX:32454303-32459937 (+)
PWK/PhJ no annotation
SPRET/EiJ no annotation
WSB/EiJ no annotation



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    3 phenotype references
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
Sequences &
Gene Models
less
  • All Sequences
    10
  • RefSeq
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 546295 NCBI Gene Model | MGI Sequence Detail 3963 C57BL/6J ±  kb
For the selected sequence
Molecular
Reagents
less
  • All nucleic 1
    Genomic 1
Other
Accession IDs
less
MGI:3705863
References
more
  • Summaries
    All 10
    Phenotypes 3
  • Earliest
    J:106768 Maclean JA 2nd, et al., Rhox homeobox gene cluster: recent duplication of three family members. Genesis. 2006 Mar;44(3):122-9
  • Latest
    J:306454 Tan K, et al., The Rhox gene cluster suppresses germline LINE1 transposition. Proc Natl Acad Sci U S A. 2021 Jun 8;118(23):e2024785118
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Funding Information
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Send questions and comments to User Support. 		last database update
11/19/2024
MGI 6.24 		The Jackson Laboratory