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H60c Gene Detail
Summary
  • Symbol
    H60c
  • Name
    histocompatibility 60c
  • Synonyms
    4632413I24Rik, Gm9491
  • Feature Type
    protein coding gene
  • IDs
    MGI:3774845
    NCBI Gene: 670558
  • Alliance
    gene page
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr10:3206208-3217771 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 10, 2.08 cM
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    254 from dbSNP Build 142
  • Strain Annotations
    13
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3774845
 protein coding gene Chr10:3206202-3218091 (-)
129S1/SvImJ MGP_129S1SvImJ_G0016971
 protein coding gene Chr10:159425-174303 (-)
A/J MGP_AJ_G0016949
 protein coding gene Chr10:166012-176455 (-)
AKR/J MGP_AKRJ_G0016914
 protein coding gene Chr10:113570-127960 (-)
BALB/cJ MGP_BALBcJ_G0016907
 protein coding gene Chr10:130361-144450 (-)
C3H/HeJ MGP_C3HHeJ_G0016732
 protein coding gene Chr10:182491-193082 (-)
C57BL/6NJ no annotation
CAROLI/EiJ no annotation
CAST/EiJ MGP_CASTEiJ_G0016314
 protein coding gene Chr10:192710-237534 (-)
CBA/J MGP_CBAJ_G0016705
 protein coding gene Chr10:119692-135331 (-)
DBA/2J MGP_DBA2J_G0016812
 protein coding gene Chr10:161187-194666 (-)
FVB/NJ MGP_FVBNJ_G0016807
 protein coding gene Chr10:132186-142773 (-)
LP/J MGP_LPJ_G0016887
 protein coding gene Chr10:172475-184424 (-)
NOD/ShiLtJ no annotation
NZO/HlLtJ MGP_NZOHlLtJ_G0017407
 protein coding gene Chr10:123200-134484 (-)
PWK/PhJ no annotation
SPRET/EiJ MGP_SPRETEiJ_G0015877
 protein coding gene Chr10:1038-5234 (+)
WSB/EiJ no annotation



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype reference
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    10
  • GO References
    3
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    1
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000091618 Ensembl Gene Model | MGI Sequence Detail 11564 C57BL/6J ±  kb
transcript ENSMUST00000216211 Ensembl | MGI Sequence Detail 1074 Not Applicable  
polypeptide ENSMUSP00000149470 Ensembl | MGI Sequence Detail 226 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    2 Sequences
  • InterPro Domains
    IPR011162 MHC classes I/II-like antigen recognition protein
    IPR037055 MHC class I-like antigen recognition-like superfamily
  • GlyGen
    B1B213 3 sites
Molecular
Reagents
less
  • All nucleic 1
    cDNA 1

    Microarray probesets 1
Other
Accession IDs
less
MGI:1921281, MGI:3779901
References
more
  • Summaries
    All 17
    Gene Ontology 3
    Phenotypes 1
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:336643 Hansen CH, et al., Gut microbiota regulates NKG2D ligand expression on intestinal epithelial cells. Eur J Immunol. 2013 Feb;43(2):447-57
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory