Gm10936 Pseudogene Detail

Summary

• Symbol
  Gm10936
• Name
  predicted gene 10936

• Feature Type
  pseudogene
• IDs
  MGI:3779146
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr10:117083926-117086632 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, 65.30 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  25 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3779146	pseudogene	Chr10:117083926-117086632 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0017756	protein coding gene	Chr10:120112723-120119029 (+)
A/J	MGP_AJ_G0017732	protein coding gene	Chr10:115450530-115453050 (+)
AKR/J	MGP_AKRJ_G0017694	protein coding gene	Chr10:118813029-118815269 (+)
BALB/cJ	MGP_BALBcJ_G0017695	protein coding gene	Chr10:115850089-115852355 (+)
C3H/HeJ	MGP_C3HHeJ_G0017520	protein coding gene	Chr10:119055742-119057982 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0018152	protein coding gene	Chr10:124257682-124259886 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0015832	protein coding gene	Chr10:110048842-110052252 (-)
CAST/EiJ	MGP_CASTEiJ_G0017082	protein coding gene	Chr10:119375749-119375878 (-)
CBA/J	MGP_CBAJ_G0017489	protein coding gene	Chr10:129161002-129163133 (+)
DBA/2J	MGP_DBA2J_G0017594	protein coding gene	Chr10:114587394-114589640 (+)
FVB/NJ	MGP_FVBNJ_G0017589	protein coding gene	Chr10:113540539-113542680 (+)
LP/J	MGP_LPJ_G0017669	protein coding gene	Chr10:120681533-120683769 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0017618	protein coding gene	Chr10:132014164-132016310 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0018190	protein coding gene	Chr10:118884717-118886853 (+)
PWK/PhJ	MGP_PWKPhJ_G0016866	protein coding gene	Chr10:114720794-114720923 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0016656	protein coding gene	Chr10:117702860-117705854 (-)
WSB/EiJ	MGP_WSBEiJ_G0017142	protein coding gene	Chr10:119077741-119079965 (+)

Homology

• Gene Tree
  Gm10936
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm10936
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000078430 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000078430	Ensembl Gene Model | MGI Sequence Detail	2707	C57BL/6J
transcript	ENSMUST00000105264	Ensembl | MGI Sequence Detail	252	Not Applicable

References

• Summaries
  All 7

  Phenotypes 5
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:74548 Benson KF, et al., Molecular Characterization of the Mouse In(10)17Rk Inversion and Identification of a Novel Muscle-Specific Gene at the Proximal Breakpoint. Genetics. 2002 Jan;160(1):279-87

TSS for Gm10936:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr95901	Chr10:117083843-117083853 (+)	-78 bp
Tssr95902	Chr10:117083886-117083897 (+)	-34 bp