Gm6157 Pseudogene Detail

Summary

• Symbol
  Gm6157
• Name
  predicted gene 6157

• Feature Type
  pseudogene
• IDs
  MGI:3779561
  NCBI Gene: 620497
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr6:70405913-70407809 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 31.90 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  165 from dbSNP Build 142
• Strain Annotations
  12

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3779561	pseudogene	Chr6:70405906-70408198 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0013539	pseudogene	Chr6:70834802-70836698 (-)
A/J	MGP_AJ_G0013525	pseudogene	Chr6:68097527-68099423 (-)
AKR/J	no annotation
BALB/cJ	MGP_BALBcJ_G0013504	pseudogene	Chr6:68153781-68155677 (-)
C3H/HeJ	MGP_C3HHeJ_G0013433	pseudogene	Chr6:114192888-114194784 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0013889	pseudogene	Chr6:72654565-72656461 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0011555	pseudogene	Chr5:25531876-25538518 (-)
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0013322	pseudogene	Chr6:75451766-75460906 (-)
DBA/2J	MGP_DBA2J_G0013401	pseudogene	Chr6:67472283-67474869 (-)
FVB/NJ	MGP_FVBNJ_G0013402	pseudogene	Chr6:66867237-66869685 (-)
LP/J	MGP_LPJ_G0013475	pseudogene	Chr6:70691023-70692919 (-)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	MGP_NZOHlLtJ_G0013881	pseudogene	Chr6:69893903-69895799 (-)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm6157
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  16
• RefSeq
  1

• Ensembl
  ENSMUSG00000105687 (Evidence)
• NCBI Gene
  620497

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000105687	Ensembl Gene Model | MGI Sequence Detail	1897	C57BL/6J
transcript	ENSMUST00000199935	Ensembl | MGI Sequence Detail	1897	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm6157:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr61316	Chr6:70406952-70406965 (-)	850 bp