Gm6297 Gene Detail

Summary

• Symbol
  Gm6297
• Name
  predicted gene 6297

• Feature Type
  lncRNA gene
• IDs
  MGI:3779584
  NCBI Gene: 622208
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr4:40720153-40722277 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 20.46 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  131 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3779584	lncRNA gene	Chr4:40720153-40722841 (-)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm6297
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  5
• Chemically and radiation induced
  1
• Gene trapped
  4
• Genomic Mutations
  1 involving Gm6297
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• cDNA Data
  7

• Other Mouse Links
  GEO

Sequences &
Gene Models

• All Sequences
  12
• RefSeq
  2

• Ensembl
  ENSMUSG00000120686 (Evidence)
• NCBI Gene
  622208

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120686	Ensembl Gene Model | MGI Sequence Detail	2125	C57BL/6J
transcript	ENSMUST00000245164	Ensembl | MGI Sequence Detail	2125	Not Applicable

Molecular
Reagents

• All nucleic 7

  cDNA 7

  
  

  Microarray probesets 1

References

• Summaries
  All 13

  Phenotypes 4
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
• Latest
  J:152068 Friedel RH, et al., EUCOMM--the European conditional mouse mutagenesis program. Brief Funct Genomic Proteomic. 2007 Sep;6(3):180-5

TSS for Gm6297:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr41255	Chr4:40722307-40722333 (-)	-43 bp
Tssr1141	Chr4:40721019-40721054 (-)	1,240 bp