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Platr6 Gene Detail
Summary
  • Symbol
    Platr6
  • Name
    pluripotency associated transcript 6
  • Synonyms
    Gm6846
  • Feature Type
    lncRNA gene
  • IDs
    MGI:3779636
    NCBI Gene: 628133
  • Alliance
    gene page
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr10:21706398-21720750 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 10, 9.83 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    584 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3779636
 lncRNA gene Chr10:21706398-21737908 (-)
129S1/SvImJ MGP_129S1SvImJ_G0005108
 lincRNA gene Chr10:19644764-19660959 (-)
A/J MGP_AJ_G0005091
 lincRNA gene Chr10:18898196-18913476 (-)
AKR/J MGP_AKRJ_G0005069
 lincRNA gene Chr10:19231619-19245854 (-)
BALB/cJ MGP_BALBcJ_G0005072
 lincRNA gene Chr10:18956270-18972425 (-)
C3H/HeJ MGP_C3HHeJ_G0005021
 lincRNA gene Chr10:19558353-19573763 (-)
C57BL/6NJ MGP_C57BL6NJ_G0005222
 lincRNA gene Chr10:20156339-20172031 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0004628
 lincRNA gene Chr10:17856785-17873917 (-)
CAST/EiJ MGP_CASTEiJ_G0004968
 lincRNA gene Chr10:19485066-19499928 (-)
CBA/J MGP_CBAJ_G0005011
 lincRNA gene Chr10:21079030-21095986 (-)
DBA/2J MGP_DBA2J_G0005030
 lincRNA gene Chr10:18769257-18783491 (-)
FVB/NJ MGP_FVBNJ_G0005052
 lincRNA gene Chr10:18507093-18521410 (-)
LP/J MGP_LPJ_G0005109
 lincRNA gene Chr10:19441987-19457045 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0005035
 lincRNA gene Chr10:21244273-21259248 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0005229
 lincRNA gene Chr10:19220401-19235412 (-)
PWK/PhJ MGP_PWKPhJ_G0004919
 lincRNA gene Chr10:18687129-18704204 (-)
SPRET/EiJ MGP_SPRETEiJ_G0004844
 lincRNA gene Chr10:19383729-19398952 (-)
WSB/EiJ MGP_WSBEiJ_G0005015
 lincRNA gene Chr10:19310349-19325640 (-)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    5 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    1
  • GO References
    1
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    1
Sequences &
Gene Models
less
  • All Sequences
    26
  • RefSeq
    4
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000097107 Ensembl Gene Model | MGI Sequence Detail 14353 C57BL/6J ±  kb
transcript ENSMUST00000180731 Ensembl | MGI Sequence Detail 1818 Not Applicable  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 1
    cDNA 1
References
more
  • Summaries
    All 11
    Gene Ontology 1
    Phenotypes 5
  • Earliest
    J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
  • Latest
    J:241492 Bergmann JH, et al., Regulation of the ESC transcriptome by nuclear long noncoding RNAs. Genome Res. 2015 Sep;25(9):1336-46
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory