Gm8539 Pseudogene Detail

Summary

• Symbol
  Gm8539
• Name
  predicted gene 8539

• Feature Type
  pseudogene
• IDs
  MGI:3779802
  NCBI Gene: 105247045
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr5:21818992-21819492 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 9.97 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  119 from dbSNP Build 142
• Strain Annotations
  15

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3779802	pseudogene	Chr5:21816767-21819557 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0012993	pseudogene	Chr5:19175452-19175952 (-)
A/J	MGP_AJ_G0012980	pseudogene	Chr5:18552610-18553110 (-)
AKR/J	MGP_AKRJ_G0012947	pseudogene	Chr5:19257333-19257833 (-)
BALB/cJ	MGP_BALBcJ_G0012960	pseudogene	Chr5:18990715-18991215 (-)
C3H/HeJ	MGP_C3HHeJ_G0012811	pseudogene	Chr5:19326674-19328393 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0013319	pseudogene	Chr5:20576021-20576521 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0012780	pseudogene	Chr5:20814384-20814884 (-)
DBA/2J	MGP_DBA2J_G0012856	pseudogene	Chr5:18835678-18836178 (-)
FVB/NJ	MGP_FVBNJ_G0012858	pseudogene	Chr5:18243932-18244432 (-)
LP/J	MGP_LPJ_G0012927	pseudogene	Chr5:19583344-19583844 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0012873	pseudogene	Chr5:22087223-22088817 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0013319	pseudogene	Chr5:18918927-18919427 (-)
PWK/PhJ	MGP_PWKPhJ_G0012363	pseudogene	Chr5:17885437-17886501 (-)
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0012580	pseudogene	Chr5:18982828-18983328 (-)

Homology

• Gene Tree
  Gm8539
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Spontaneous
  1
• Genomic Mutations
  3 involving Gm8539
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19
• RefSeq
  1

• Ensembl
  ENSMUSG00000106294 (Evidence)
• NCBI Gene
  105247045

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000106294	Ensembl Gene Model | MGI Sequence Detail	501	C57BL/6J
transcript	ENSMUST00000199822	Ensembl | MGI Sequence Detail	501	Not Applicable

References

• Summaries
  All 8

  Phenotypes 4
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17