Gm8550 Pseudogene Detail

Summary

• Symbol
  Gm8550
• Name
  predicted gene 8550

• Feature Type
  pseudogene
• IDs
  MGI:3779803
  NCBI Gene: 667276
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:65067239-65067891 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 32.80 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  148 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3779803	pseudogene	Chr1:65067124-65068134 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0010182	pseudogene	Chr1:65216812-65217464 (+)
A/J	MGP_AJ_G0010175	pseudogene	Chr1:62924293-62924945 (+)
AKR/J	MGP_AKRJ_G0010148	pseudogene	Chr1:64683872-64684524 (+)
BALB/cJ	MGP_BALBcJ_G0010154	pseudogene	Chr1:63020011-63020663 (+)
C3H/HeJ	MGP_C3HHeJ_G0010091	pseudogene	Chr1:64957945-64958597 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0010407	pseudogene	Chr1:67736177-67736829 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0009149	pseudogene	Chr1:58977123-58977776 (+)
CAST/EiJ	MGP_CASTEiJ_G0009921	pseudogene	Chr1:64226079-64226736 (+)
CBA/J	MGP_CBAJ_G0010059	pseudogene	Chr1:69941420-69942073 (+)
DBA/2J	MGP_DBA2J_G0010086	pseudogene	Chr1:62324109-62324762 (+)
FVB/NJ	MGP_FVBNJ_G0010109	pseudogene	Chr1:61599855-61600507 (+)
LP/J	MGP_LPJ_G0010171	pseudogene	Chr1:66116853-66117505 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0010069	pseudogene	Chr1:72792984-72793636 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0010385	pseudogene	Chr1:64667447-64668099 (+)
PWK/PhJ	MGP_PWKPhJ_G0009823	pseudogene	Chr1:61724016-61724672 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0009636	pseudogene	Chr1:64150110-64150785 (+)
WSB/EiJ	MGP_WSBEiJ_G0009985	pseudogene	Chr1:64375252-64375904 (+)

Homology

• Gene Tree
  Gm8550
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm8550
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000090042 (Evidence)
• NCBI Gene
  667276

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000090042	Ensembl Gene Model | MGI Sequence Detail	653	C57BL/6J
transcript	ENSMUST00000161621	Ensembl | MGI Sequence Detail	653	Not Applicable

References

• Summaries
  All 8

  Phenotypes 4
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:7938 Juriloff DM, et al., Genetic and developmental studies of a new mouse mutation that produces otocephaly. J Craniofac Genet Dev Biol. 1985;5(2):121-45

TSS for Gm8550:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr7104	Chr1:65067216-65067220 (+)	-21 bp