Gm9456 Gene Detail

Summary

• Symbol
  Gm9456
• Name
  predicted gene 9456

• Feature Type
  lncRNA gene
• IDs
  MGI:3779866
  NCBI Gene: 669389
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr18:80513339-80513846 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  93 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3779866	lncRNA gene	Chr18:80513339-80513846 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm9456
  

Gene Ontology
(GO)
Classifications

Expression

• cDNA Data
  1

• Other Mouse Links
  GEO

Sequences &
Gene Models

• All Sequences
  5
• RefSeq
  1

• Ensembl
  ENSMUSG00000120406 (Evidence)
• NCBI Gene
  669389

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120406	Ensembl Gene Model | MGI Sequence Detail	508	C57BL/6J
transcript	ENSMUST00000243120	Ensembl | MGI Sequence Detail	508	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 6
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm9456:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr152109	Chr18:80513333-80513349 (+)	2 bp
Tssr152110	Chr18:80513373-80513386 (+)	41 bp