Pate11 Gene Detail

Summary

• Symbol
  Pate11
• Name
  prostate and testis expressed 11
• Synonyms
  Gm9513

• Feature Type
  protein coding gene
• IDs
  MGI:3779923
  NCBI Gene: 671003
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr9:36386934-36388482 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, 20.64 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  95 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3779923	protein coding gene	Chr9:36386879-36393131 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0034549	protein coding gene	Chr9:34389245-34390819 (+)
A/J	MGP_AJ_G0034528	protein coding gene	Chr9:33499477-33501051 (+)
AKR/J	MGP_AKRJ_G0034455	protein coding gene	Chr9:34247375-34248949 (+)
BALB/cJ	MGP_BALBcJ_G0034519	protein coding gene	Chr9:33362610-33364184 (+)
C3H/HeJ	MGP_C3HHeJ_G0034232	protein coding gene	Chr9:34653691-34655265 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0035041	protein coding gene	Chr9:35495746-35497320 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0033553	protein coding gene	Chr9:34383062-34384637 (+)
CBA/J	MGP_CBAJ_G0034205	protein coding gene	Chr9:36733166-36734741 (+)
DBA/2J	MGP_DBA2J_G0034363	protein coding gene	Chr9:33558224-33559798 (+)
FVB/NJ	MGP_FVBNJ_G0034304	protein coding gene	Chr9:32812560-32814134 (+)
LP/J	MGP_LPJ_G0034449	protein coding gene	Chr9:34688622-34690197 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0034350	protein coding gene	Chr9:38390733-38392307 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0035061	protein coding gene	Chr9:34195599-34197174 (+)
PWK/PhJ	MGP_PWKPhJ_G0033259	protein coding gene	Chr9:33491290-33492864 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0033093	protein coding gene	Chr9:34399974-34401548 (+)
WSB/EiJ	MGP_WSBEiJ_G0033669	protein coding gene	Chr9:33989081-33990655 (+)

Homology

• MGI Vertebrate Homology
  Pate11 stringent orthology
  1 mouse;3 rat
  
• Gene Tree
  Pate11
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  3
• Endonuclease-mediated
  1
• Targeted
  2
• Genomic Mutations
  1 involving Pate11
• Incidental Mutations
  Mutagenetix , APF , CvDC
• Find Mice (IMSR)
  6 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  2
• UniProt
  1
• CCDS
  CCDS52765.1

• Ensembl
  ENSMUSG00000090710 (Evidence)
• NCBI Gene
  671003

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000090710	Ensembl Gene Model | MGI Sequence Detail	1549	C57BL/6J
transcript	ENSMUST00000165591	Ensembl | MGI Sequence Detail	306	Not Applicable
polypeptide	ENSMUSP00000129404	Ensembl | MGI Sequence Detail	99	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• 
  

  Microarray probesets 1

Other
Accession IDs

MGI:6278530

References

• Summaries
  All 12

  Phenotypes 2
• Earliest
  J:138601 Levitin F, et al., PATE gene clusters code for multiple, secreted TFP/Ly-6/uPAR proteins that are expressed in reproductive and neuron-rich tissues and possess neuromodulatory activity. J Biol Chem. 2008 Jun 13;283(24):16928-39
• Latest
  J:279308 Fujihara Y, et al., Identification of multiple male reproductive tract-specific proteins that regulate sperm migration through the oviduct in mice. Proc Natl Acad Sci U S A. 2019 Sep 10;116(37):18498-18506

TSS for Pate11:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr84364	Chr9:36386876-36386881 (+)	-55 bp