Hspd1-ps1 Pseudogene Detail

Summary

• Symbol
  Hspd1-ps1
• Name
  heat shock protein 1 (chaperonin), pseudogene 1
• Synonyms
  Gm9546

• Feature Type
  pseudogene
• IDs
  MGI:3779956
  NCBI Gene: 671994
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr8:42376557-42380164 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, 23.89 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  246 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3779956	pseudogene	Chr8:42376557-42380167 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0014070	pseudogene	Chr8:40790523-40794575 (+)
A/J	MGP_AJ_G0014088	pseudogene	Chr8:39268175-39272026 (+)
AKR/J	MGP_AKRJ_G0014017	pseudogene	Chr8:40428607-40436525 (+)
BALB/cJ	MGP_BALBcJ_G0014041	pseudogene	Chr8:39358603-39362221 (+)
C3H/HeJ	MGP_C3HHeJ_G0013872	pseudogene	Chr8:40791693-40793759 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0014479	pseudogene	Chr8:42296367-42300578 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0013528	pseudogene	Chr8:40297937-40300268 (+)
CBA/J	MGP_CBAJ_G0013854	pseudogene	Chr8:44091044-44095848 (+)
DBA/2J	MGP_DBA2J_G0013933	pseudogene	Chr8:39042842-39047184 (+)
FVB/NJ	MGP_FVBNJ_G0013935	pseudogene	Chr8:38637666-38642010 (+)
LP/J	MGP_LPJ_G0014019	pseudogene	Chr8:40842422-40845161 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0013961	pseudogene	Chr8:43885751-43894129 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0014453	pseudogene	Chr8:40592312-40599385 (+)
PWK/PhJ	MGP_PWKPhJ_G0013341	pseudogene	Chr8:38590205-38594031 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0013120	pseudogene	Chr8:39748036-39751585 (+)
WSB/EiJ	MGP_WSBEiJ_G0013589	pseudogene	Chr8:40766217-40768329 (+)

Homology

• Gene Tree
  Hspd1-ps1
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000108069 (Evidence)
• NCBI Gene
  671994

Representative Sequences			Length	Strain/Species
genomic	671994	NCBI Gene Model | MGI Sequence Detail	3608	C57BL/6J

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;