Gm9625 Pseudogene Detail

Summary

• Symbol
  Gm9625
• Name
  predicted gene 9625

• Feature Type
  pseudogene
• IDs
  MGI:3780033
  NCBI Gene: 674597
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr13:67958365-67959319 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, 34.80 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  111 from dbSNP Build 142
• Strain Annotations
  9

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3780033	pseudogene	Chr13:67958291-67959390 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0011032	pseudogene	Chr13:67993125-67993978 (+)
A/J	no annotation
AKR/J	MGP_AKRJ_G0010989	pseudogene	Chr13:67758390-67761242 (+)
BALB/cJ	MGP_BALBcJ_G0011895	pseudogene	Chr2:150945626-150946393 (+)
C3H/HeJ	MGP_C3HHeJ_G0010908	pseudogene	Chr13:67387454-67388279 (+)
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0010880	pseudogene	Chr13:72992810-72993635 (+)
DBA/2J	no annotation
FVB/NJ	MGP_FVBNJ_G0011809	pseudogene	Chr2:148294458-148295585 (+)
LP/J	MGP_LPJ_G0011014	pseudogene	Chr13:68291735-68292518 (+)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	MGP_NZOHlLtJ_G0011269	pseudogene	Chr13:67008622-67009387 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm9625
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm9625
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  13
• RefSeq
  1

• Ensembl
  ENSMUSG00000097906 (Evidence)
• NCBI Gene
  674597

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000097906	Ensembl Gene Model | MGI Sequence Detail	955	C57BL/6J
transcript	ENSMUST00000180422	Ensembl | MGI Sequence Detail	955	Not Applicable

References

• Summaries
  All 7

  Phenotypes 3
• Earliest
  J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69

TSS for Gm9625:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr120263	Chr13:67958289-67958292 (+)	-74 bp