Gm9703 Pseudogene Detail

Summary

• Symbol
  Gm9703
• Name
  predicted gene 9703

• Feature Type
  pseudogene
• IDs
  MGI:3780110
  NCBI Gene: 677010
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr17:27749041-27749386 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, 14.39 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  39 from dbSNP Build 142
• Strain Annotations
  14

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3780110	pseudogene	Chr17:27749006-27749451 (+)
129S1/SvImJ	no annotation
A/J	MGP_AJ_G0011322	pseudogene	Chr17:25986514-25986867 (+)
AKR/J	MGP_AKRJ_G0011287	pseudogene	Chr17:26146581-26146923 (+)
BALB/cJ	MGP_BALBcJ_G0011297	pseudogene	Chr17:26252088-26261607 (+)
C3H/HeJ	MGP_C3HHeJ_G0011188	pseudogene	Chr17:26522846-26523188 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0011589	pseudogene	Chr17:27942443-27942785 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0013742	pseudogene	ChrX:7125960-7126304 (-)
CBA/J	MGP_CBAJ_G0011169	pseudogene	Chr17:28912785-28913127 (+)
DBA/2J	MGP_DBA2J_G0011220	pseudogene	Chr17:25542873-25543747 (+)
FVB/NJ	MGP_FVBNJ_G0011220	pseudogene	Chr17:25333351-25333693 (+)
LP/J	no annotation
NOD/ShiLtJ	MGP_NODShiLtJ_G0011217	pseudogene	Chr17:28406084-28406426 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0011567	pseudogene	Chr17:26544272-26544675 (+)
PWK/PhJ	MGP_PWKPhJ_G0013560	pseudogene	ChrX:6721578-6722036 (-)
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0014191	pseudogene	ChrX:100408806-100409149 (-)

Homology

• Gene Tree
  Gm9703
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  1
• Radiation induced
  1
• Genomic Mutations
  1 involving Gm9703
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  18
• RefSeq
  1

• Ensembl
  ENSMUSG00000082741 (Evidence)
• NCBI Gene
  677010

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000082741	Ensembl Gene Model | MGI Sequence Detail	346	C57BL/6J
transcript	ENSMUST00000119573	Ensembl | MGI Sequence Detail	346	Not Applicable

References

• Summaries
  All 7

  Phenotypes 3
• Earliest
  J:86784 Bergstrom DE, et al., Overlapping deletions spanning the proximal two-thirds of the mouse t complex. Mamm Genome. 2003 Dec;14(12):817-29
• Latest
  J:194116 Flachs P, et al., Interallelic and intergenic incompatibilities of the Prdm9 (Hst1) gene in mouse hybrid sterility. PLoS Genet. 2012;8(11):e1003044

TSS for Gm9703:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr143322	Chr17:27748963-27748968 (+)	-75 bp