Gm9719 Pseudogene Detail

Summary

• Symbol
  Gm9719
• Name
  predicted gene 9719

• Feature Type
  pseudogene
• IDs
  MGI:3780128
  NCBI Gene: 677501
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr9:75005880-75006422 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, 42.27 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  114 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3780128	pseudogene	Chr9:75005880-75006422 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0014171	pseudogene	Chr9:75385705-75386247 (-)
A/J	MGP_AJ_G0014188	pseudogene	Chr9:72747399-72747941 (-)
AKR/J	MGP_AKRJ_G0014114	pseudogene	Chr9:74497342-74499454 (-)
BALB/cJ	MGP_BALBcJ_G0014139	pseudogene	Chr9:72433934-72434476 (-)
C3H/HeJ	MGP_C3HHeJ_G0013970	pseudogene	Chr9:74963054-74964519 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0014582	pseudogene	Chr9:77399014-77401246 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0013627	pseudogene	Chr9:75302988-75303531 (-)
CBA/J	MGP_CBAJ_G0013952	pseudogene	Chr9:80045380-80045922 (-)
DBA/2J	MGP_DBA2J_G0014036	pseudogene	Chr9:72420419-72420961 (-)
FVB/NJ	MGP_FVBNJ_G0014035	pseudogene	Chr9:71733876-71734595 (-)
LP/J	MGP_LPJ_G0014119	pseudogene	Chr9:75636582-75637124 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0014065	pseudogene	Chr9:81146484-81147823 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0014556	pseudogene	Chr9:74657530-74658072 (-)
PWK/PhJ	MGP_PWKPhJ_G0013443	pseudogene	Chr9:72708658-72709161 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0013228	pseudogene	Chr9:74874855-74875397 (-)
WSB/EiJ	MGP_WSBEiJ_G0013686	pseudogene	Chr9:74570570-74571112 (-)

Homology

• Gene Tree
  Gm9719
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm9719
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00000090001 (Evidence)
• NCBI Gene
  677501

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000090001	Ensembl Gene Model | MGI Sequence Detail	543	C57BL/6J
transcript	ENSMUST00000162765	Ensembl | MGI Sequence Detail	543	Not Applicable

References

• Summaries
  All 6

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm9719:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr90529	Chr9:75006454-75006458 (-)	-34 bp