Gm1992 Gene Detail

Summary

• Symbol
  Gm1992
• Name
  predicted gene 1992

• Feature Type
  lncRNA gene
• IDs
  MGI:3780162
  NCBI Gene: 100038975
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr1:3536810-3583776 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 1.65 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1190 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3780162	lncRNA gene	Chr1:3536810-3583776 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0002638	antisense lncRNA gene	Chr1:454129-501671 (+)
A/J	MGP_AJ_G0002614	antisense lncRNA gene	Chr1:550076-602303 (+)
AKR/J	MGP_AKRJ_G0002594	antisense lncRNA gene	Chr1:463979-513361 (+)
BALB/cJ	MGP_BALBcJ_G0002600	antisense lncRNA gene	Chr1:500238-546438 (+)
C3H/HeJ	MGP_C3HHeJ_G0002560	antisense lncRNA gene	Chr1:507054-554359 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0002744	antisense lncRNA gene	Chr1:497677-548269 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002292	antisense lncRNA gene	Chr1:380088-424359 (+)
CAST/EiJ	MGP_CASTEiJ_G0002535	antisense lncRNA gene	Chr1:657470-705655 (+)
CBA/J	MGP_CBAJ_G0002555	antisense lncRNA gene	Chr1:558919-607788 (+)
DBA/2J	MGP_DBA2J_G0002560	antisense lncRNA gene	Chr1:489165-535506 (+)
FVB/NJ	MGP_FVBNJ_G0002580	antisense lncRNA gene	Chr1:479864-524400 (+)
LP/J	MGP_LPJ_G0002640	antisense lncRNA gene	Chr1:634914-683004 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0002571	antisense lncRNA gene	Chr1:625839-677725 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0002749	antisense lncRNA gene	Chr1:470532-516529 (+)
PWK/PhJ	MGP_PWKPhJ_G0002492	antisense lncRNA gene	Chr1:446504-491864 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0002444	antisense lncRNA gene	Chr1:635896-682640 (+)
WSB/EiJ	MGP_WSBEiJ_G0002563	antisense lncRNA gene	Chr1:494139-542382 (+)

Homology

• Gene Tree
  Gm1992
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000089699 (Evidence)
• NCBI Gene
  100038975

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000089699	Ensembl Gene Model | MGI Sequence Detail	46967	C57BL/6J
transcript	ENSMUST00000161581	Ensembl | MGI Sequence Detail	250	Not Applicable

References

• Summaries
  All 6

  Phenotypes 1
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;