Gm2065 Gene Detail

Summary

• Symbol
  Gm2065
• Name
  predicted gene 2065

• Feature Type
  lncRNA gene
• IDs
  MGI:3780232
  NCBI Gene: 102639511
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr9:82996161-82998917 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  223 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3780232	lncRNA gene	Chr9:82980190-83007829 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0002326	unclassified gene	Chr9:83779557-83782361 (+)
A/J	MGP_AJ_G0002303	unclassified gene	Chr9:80869000-80871804 (+)
AKR/J	MGP_AKRJ_G0002289	unclassified gene	Chr9:82767548-82770348 (+)
BALB/cJ	MGP_BALBcJ_G0002297	unclassified gene	Chr9:80516717-80519521 (+)
C3H/HeJ	MGP_C3HHeJ_G0002274	unclassified gene	Chr9:83301999-83304803 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0002423	unclassified gene	Chr9:86082461-86085217 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002032	unclassified gene	Chr9:79824021-79826794 (+)
CAST/EiJ	MGP_CASTEiJ_G0002238	unclassified gene	Chr9:83693682-83696484 (+)
CBA/J	MGP_CBAJ_G0002268	unclassified gene	Chr9:89119762-89122562 (+)
DBA/2J	MGP_DBA2J_G0002271	unclassified gene	Chr9:80453712-80456516 (+)
FVB/NJ	MGP_FVBNJ_G0002280	unclassified gene	Chr9:79611973-79614777 (+)
LP/J	MGP_LPJ_G0002325	unclassified gene	Chr9:83976961-83979765 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0002255	unclassified gene	Chr9:90547877-90550681 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0002411	unclassified gene	Chr9:82942250-82945054 (+)
PWK/PhJ	MGP_PWKPhJ_G0002198	unclassified gene	Chr9:80624749-80627548 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0002159	unclassified gene	Chr9:83116156-83118949 (+)
WSB/EiJ	MGP_WSBEiJ_G0002266	unclassified gene	Chr9:82921114-82923918 (+)

Homology

• Gene Tree
  Gm2065
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm2065
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  31
• RefSeq
  10

• Ensembl
  ENSMUSG00000102882 (Evidence)
• NCBI Gene
  102639511

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000102882	Ensembl Gene Model | MGI Sequence Detail	2757	C57BL/6J
transcript	XR_001779241	RefSeq | MGI Sequence Detail	7144	C57BL/6J

Molecular
Reagents

• All nucleic 2

  cDNA 2

  
  

  Microarray probesets 1

References

• Summaries
  All 11

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:57747 MGI Genome Annotation Group and UniGene Staff, MGI-UniGene Interconnection Effort. Database Download. 2015;

TSS for Gm2065:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr86349	Chr9:82994635-82994646 (+)	-1,520 bp