Gm2087 Gene Detail

Summary

• Symbol
  Gm2087
• Name
  predicted gene 2087

• Feature Type
  lncRNA gene
• IDs
  MGI:3780254
  NCBI Gene: 100039186
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr9:83313600-83336626 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, 45.45 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  685 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3780254	lncRNA gene	Chr9:83313600-83336627 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004656	antisense lncRNA gene	Chr9:84103823-84129724 (+)
A/J	MGP_AJ_G0004637	antisense lncRNA gene	Chr9:81182119-81205117 (+)
AKR/J	MGP_AKRJ_G0004620	antisense lncRNA gene	Chr9:83085118-83108331 (+)
BALB/cJ	MGP_BALBcJ_G0004621	antisense lncRNA gene	Chr9:80837828-80861189 (+)
C3H/HeJ	MGP_C3HHeJ_G0004570	antisense lncRNA gene	Chr9:83610253-83639272 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0004771	antisense lncRNA gene	Chr9:86404812-86429065 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004221	antisense lncRNA gene	Chr9:80116795-80141256 (+)
CAST/EiJ	MGP_CASTEiJ_G0004526	antisense lncRNA gene	Chr9:84014191-84039329 (+)
CBA/J	MGP_CBAJ_G0004564	antisense lncRNA gene	Chr9:89486808-89516358 (+)
DBA/2J	MGP_DBA2J_G0004579	antisense lncRNA gene	Chr9:80781309-80808439 (+)
FVB/NJ	MGP_FVBNJ_G0004597	antisense lncRNA gene	Chr9:79917468-79944585 (+)
LP/J	MGP_LPJ_G0004660	antisense lncRNA gene	Chr9:84302576-84326407 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004585	antisense lncRNA gene	Chr9:90892858-90920139 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004770	antisense lncRNA gene	Chr9:83261373-83284389 (+)
PWK/PhJ	MGP_PWKPhJ_G0004480	antisense lncRNA gene	Chr9:80937366-80962655 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0004420	antisense lncRNA gene	Chr9:83423582-83449210 (+)
WSB/EiJ	MGP_WSBEiJ_G0004569	antisense lncRNA gene	Chr9:83239374-83270995 (+)

Homology

• Gene Tree
  Gm2087
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  1
• Gene trapped
  3
• Genomic Mutations
  1 involving Gm2087
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  1

• Ensembl
  ENSMUSG00000099718 (Evidence)
• NCBI Gene
  100039186

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000099718	Ensembl Gene Model | MGI Sequence Detail	23027	C57BL/6J
transcript	ENSMUST00000188217	Ensembl | MGI Sequence Detail	366	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 11

  Phenotypes 4
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14

TSS for Gm2087:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr86351	Chr9:83313576-83313583 (+)	-20 bp