Gm2147 Pseudogene Detail

Summary

• Symbol
  Gm2147
• Name
  predicted gene 2147

• Feature Type
  pseudogene
• IDs
  MGI:3780316
  NCBI Gene: 100039302
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:6450618-6451256 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 1.89 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  162 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3780316	pseudogene	Chr1:6450498-6452616 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0009970	pseudogene	Chr1:3572240-3572878 (+)
A/J	MGP_AJ_G0009951	pseudogene	Chr1:3528277-3528902 (+)
AKR/J	MGP_AKRJ_G0009934	pseudogene	Chr1:3506650-3507887 (+)
BALB/cJ	MGP_BALBcJ_G0009939	pseudogene	Chr1:3410851-3411476 (+)
C3H/HeJ	MGP_C3HHeJ_G0009867	pseudogene	Chr1:3478085-3478707 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0010184	pseudogene	Chr1:3642822-3643460 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0012636	pseudogene	ChrX:45903567-45915317 (-)
CAST/EiJ	MGP_CASTEiJ_G0009723	pseudogene	Chr1:3660662-3661300 (+)
CBA/J	MGP_CBAJ_G0009843	pseudogene	Chr1:3806219-3806844 (+)
DBA/2J	MGP_DBA2J_G0009866	pseudogene	Chr1:3365529-3366154 (+)
FVB/NJ	MGP_FVBNJ_G0009894	pseudogene	Chr1:3311793-3312418 (+)
LP/J	MGP_LPJ_G0009964	pseudogene	Chr1:3640201-3640811 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0009853	pseudogene	Chr1:4095986-4096611 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0010162	pseudogene	Chr1:3464966-3465604 (+)
PWK/PhJ	MGP_PWKPhJ_G0013675	pseudogene	ChrX:35784434-35794731 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0013470	pseudogene	ChrX:37135795-37145819 (-)
WSB/EiJ	MGP_WSBEiJ_G0009786	pseudogene	Chr1:3423113-3424065 (+)

Homology

• Gene Tree
  Gm2147
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000103355 (Evidence)
• NCBI Gene
  100039302

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000103355	Ensembl Gene Model | MGI Sequence Detail	639	C57BL/6J
transcript	ENSMUST00000193588	Ensembl | MGI Sequence Detail	639	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm2147:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr5830	Chr1:6450496-6450506 (+)	-117 bp