Gm2272 Pseudogene Detail

Summary

• Symbol
  Gm2272
• Name
  predicted gene 2272

• Feature Type
  pseudogene
• IDs
  MGI:3780442
  NCBI Gene: 100039501
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr1:191139863-191140444 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 96.28 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  147 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3780442	pseudogene	Chr1:191139855-191140444 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0010477	pseudogene	Chr1:198446568-198447149 (+)
A/J	MGP_AJ_G0010466	pseudogene	Chr1:190309193-190309774 (+)
AKR/J	MGP_AKRJ_G0010432	pseudogene	Chr1:195963587-195964168 (+)
BALB/cJ	MGP_BALBcJ_G0010440	pseudogene	Chr1:190989163-190989744 (+)
C3H/HeJ	MGP_C3HHeJ_G0010371	pseudogene	Chr1:196806993-196807574 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0010712	pseudogene	Chr1:204785526-204786107 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0009389	pseudogene	Chr1:181208639-181209207 (+)
CAST/EiJ	MGP_CASTEiJ_G0010190	pseudogene	Chr1:196400844-196401426 (+)
CBA/J	MGP_CBAJ_G0010337	pseudogene	Chr1:212351953-212352534 (+)
DBA/2J	MGP_DBA2J_G0010369	pseudogene	Chr1:189036564-189037145 (+)
FVB/NJ	MGP_FVBNJ_G0010392	pseudogene	Chr1:187159839-187160420 (+)
LP/J	MGP_LPJ_G0010458	pseudogene	Chr1:199627511-199628092 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0010357	pseudogene	Chr1:219055360-219055941 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0010684	pseudogene	Chr1:195828657-195829238 (+)
PWK/PhJ	MGP_PWKPhJ_G0010093	pseudogene	Chr1:188321212-188321793 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0009908	pseudogene	Chr1:194840012-194840595 (+)
WSB/EiJ	MGP_WSBEiJ_G0010261	pseudogene	Chr1:196058279-196058860 (+)

Homology

• Gene Tree
  Gm2272
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000103433 (Evidence)
• NCBI Gene
  100039501

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000103433	Ensembl Gene Model | MGI Sequence Detail	582	C57BL/6J
transcript	ENSMUST00000194903	Ensembl | MGI Sequence Detail	582	Not Applicable

References

• Summaries
  All 6

  Phenotypes 2
• Earliest
  J:85162 Hansen J, et al., A large-scale, gene-driven mutagenesis approach for the functional analysis of the mouse genome. Proc Natl Acad Sci U S A. 2003 Aug 19;100(17):9918-22