Gm2287 Pseudogene Detail

Summary

• Symbol
  Gm2287
• Name
  predicted gene 2287

• Feature Type
  pseudogene
• IDs
  MGI:3780458
  NCBI Gene: 100039521
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:86214616-86215615 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 43.56 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  142 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3780458	pseudogene	Chr5:86214616-86215615 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0039730	pseudogene	Chr5:86892911-86894049 (+)
A/J	MGP_AJ_G0039731	pseudogene	Chr5:83338226-83339364 (+)
AKR/J	MGP_AKRJ_G0039655	pseudogene	Chr5:86105196-86106334 (+)
BALB/cJ	MGP_BALBcJ_G0039699	pseudogene	Chr5:84245834-84246972 (+)
C3H/HeJ	MGP_C3HHeJ_G0039362	pseudogene	Chr5:86596312-86597450 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0040260	pseudogene	Chr5:90475678-90476816 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0036889	pseudogene	Chr5:79204811-79205940 (+)
CAST/EiJ	MGP_CASTEiJ_G0038481	pseudogene	Chr5:85849881-85851019 (+)
CBA/J	MGP_CBAJ_G0039333	pseudogene	Chr5:93369259-93370397 (+)
DBA/2J	MGP_DBA2J_G0039526	pseudogene	Chr5:83513959-83515097 (+)
FVB/NJ	MGP_FVBNJ_G0039485	pseudogene	Chr5:82472258-82473396 (+)
LP/J	MGP_LPJ_G0039565	pseudogene	Chr5:87301182-87302320 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0039487	pseudogene	Chr5:98177894-98179032 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0040361	pseudogene	Chr5:85690581-85691719 (+)
PWK/PhJ	MGP_PWKPhJ_G0038155	pseudogene	Chr5:82498236-82499372 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0037903	pseudogene	Chr5:85045041-85046178 (+)
WSB/EiJ	MGP_WSBEiJ_G0038715	pseudogene	Chr5:86030914-86032052 (+)

Homology

• Gene Tree
  Gm2287
  

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000106282 (Evidence)
• NCBI Gene
  100039521

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000106282	Ensembl Gene Model | MGI Sequence Detail	1000	C57BL/6J
transcript	ENSMUST00000199619	Ensembl | MGI Sequence Detail	1000	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 5
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm2287:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr46825	Chr5:86213645-86213671 (+)	-958 bp