Gm2399 Pseudogene Detail

Summary

• Symbol
  Gm2399
• Name
  predicted gene 2399

• Feature Type
  pseudogene
• IDs
  MGI:3780567
  NCBI Gene: 105245453
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr13:12717251-12717475 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, 5.12 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  10 from dbSNP Build 142
• Strain Annotations
  15

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3780567	pseudogene	Chr13:12717151-12717477 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0020234	protein coding gene	Chr13:9525973-9526200 (+)
A/J	MGP_AJ_G0020193	protein coding gene	Chr13:10322073-10322300 (+)
AKR/J	MGP_AKRJ_G0020167	protein coding gene	Chr13:10431203-10431430 (+)
BALB/cJ	no annotation
C3H/HeJ	MGP_C3HHeJ_G0019980	protein coding gene	Chr13:9658089-9658316 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0020623	protein coding gene	Chr13:10923339-10923566 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0018229	protein coding gene	Chr13:9117927-9118154 (+)
CAST/EiJ	MGP_CASTEiJ_G0019517	protein coding gene	Chr13:10230759-10230986 (+)
CBA/J	MGP_CBAJ_G0019947	protein coding gene	Chr13:11276677-11276904 (+)
DBA/2J	MGP_DBA2J_G0020066	protein coding gene	Chr13:9988840-9989067 (+)
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	MGP_NODShiLtJ_G0020084	protein coding gene	Chr13:11271499-11271726 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0020650	protein coding gene	Chr13:10180052-10180279 (+)
PWK/PhJ	MGP_PWKPhJ_G0019280	protein coding gene	Chr13:10072495-10072722 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0019087	protein coding gene	Chr13:9386520-9386747 (+)
WSB/EiJ	MGP_WSBEiJ_G0019578	protein coding gene	Chr13:10254728-10254955 (+)

Homology

• Gene Tree
  Gm2399
  

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20
• RefSeq
  1

• Ensembl
  ENSMUSG00000078141 (Evidence)
• NCBI Gene
  105245453

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000078141	Ensembl Gene Model | MGI Sequence Detail	225	C57BL/6J
transcript	ENSMUST00000104944	Ensembl | MGI Sequence Detail	225	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 5
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;