Gm2453 Gene Detail

Summary

• Symbol
  Gm2453
• Name
  predicted gene 2453

• Feature Type
  lncRNA gene
• IDs
  MGI:3780620
  NCBI Gene: 118567864
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:167112695-167113507 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  93 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3780620	lncRNA gene	Chr1:167112637-167117425 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0005034	lincRNA gene	Chr1:172841472-172846269 (+)
A/J	MGP_AJ_G0005016	lincRNA gene	Chr1:165792156-165796944 (+)
AKR/J	MGP_AKRJ_G0004994	lincRNA gene	Chr1:170803145-170807933 (+)
BALB/cJ	MGP_BALBcJ_G0004998	lincRNA gene	Chr1:166272292-166277085 (+)
C3H/HeJ	MGP_C3HHeJ_G0004946	lincRNA gene	Chr1:171035801-171040589 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0005148	lincRNA gene	Chr1:178639747-178644535 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004558	lincRNA gene	Chr1:157638715-157643532 (+)
CAST/EiJ	MGP_CASTEiJ_G0004894	lincRNA gene	Chr1:170641971-170647876 (+)
CBA/J	MGP_CBAJ_G0004937	lincRNA gene	Chr1:184966027-184970799 (+)
DBA/2J	MGP_DBA2J_G0004956	lincRNA gene	Chr1:164637383-164642155 (+)
FVB/NJ	MGP_FVBNJ_G0004977	lincRNA gene	Chr1:163086256-163090924 (+)
LP/J	MGP_LPJ_G0005034	lincRNA gene	Chr1:173918862-173923650 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004961	lincRNA gene	Chr1:192352283-192357071 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0005153	lincRNA gene	Chr1:170673443-170678229 (+)
PWK/PhJ	MGP_PWKPhJ_G0004845	lincRNA gene	Chr1:163842972-163847681 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0004771	lincRNA gene	Chr1:169451382-169457501 (+)
WSB/EiJ	MGP_WSBEiJ_G0004940	lincRNA gene	Chr1:170767842-170772629 (+)

Homology

• Gene Tree
  Gm2453
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  2
• Genomic Mutations
  2 involving Gm2453
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1

• Ensembl
  ENSMUSG00000102909 (Evidence)
• NCBI Gene
  118567864

Representative Sequences			Length	Strain/Species
genomic	118567864	NCBI Gene Model | MGI Sequence Detail	813	C57BL/6J
transcript	NR_190327	RefSeq | MGI Sequence Detail	740	C57BL/6

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 10

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:57747 MGI Genome Annotation Group and UniGene Staff, MGI-UniGene Interconnection Effort. Database Download. 2015;

TSS for Gm2453:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr9885	Chr1:167111482-167111492 (+)	-1,208 bp