Gm2623 Pseudogene Detail

Summary

• Symbol
  Gm2623
• Name
  predicted gene 2623

• Feature Type
  pseudogene
• IDs
  MGI:3780791
  NCBI Gene: 100040141
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:32995473-32995758 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 17.34 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  68 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3780791	pseudogene	Chr5:32995444-32995803 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0013044	pseudogene	Chr5:30976144-30976429 (+)
A/J	MGP_AJ_G0013028	pseudogene	Chr5:29977903-29978188 (+)
AKR/J	MGP_AKRJ_G0012995	pseudogene	Chr5:31132271-31132556 (+)
BALB/cJ	MGP_BALBcJ_G0013008	pseudogene	Chr5:30506597-30506882 (+)
C3H/HeJ	MGP_C3HHeJ_G0012860	pseudogene	Chr5:31177740-31178025 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0013367	pseudogene	Chr5:32840613-32840898 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0011567	pseudogene	Chr5:27786174-27786454 (+)
CAST/EiJ	MGP_CASTEiJ_G0012593	pseudogene	Chr5:30246874-30247159 (+)
CBA/J	MGP_CBAJ_G0012827	pseudogene	Chr5:33515432-33515717 (+)
DBA/2J	MGP_DBA2J_G0012906	pseudogene	Chr5:30168272-30168557 (+)
FVB/NJ	MGP_FVBNJ_G0012909	pseudogene	Chr5:29557246-29557531 (+)
LP/J	MGP_LPJ_G0012977	pseudogene	Chr5:31395049-31395334 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0012928	pseudogene	Chr5:34382024-34382309 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0013369	pseudogene	Chr5:30651779-30652064 (+)
PWK/PhJ	MGP_PWKPhJ_G0012412	pseudogene	Chr5:29279964-29280249 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0012213	pseudogene	Chr5:30083434-30083719 (+)
WSB/EiJ	MGP_WSBEiJ_G0012630	pseudogene	Chr5:30709117-30709402 (+)

Homology

• Gene Tree
  Gm2623
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  9 phenotype references
  

• All Mutations and Alleles
  5
• Chemically induced (ENU)
  1
• Chemically induced (other)
  2
• Radiation induced
  1
• Spontaneous
  1
• Genomic Mutations
  5 involving Gm2623
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000106654 (Evidence)
• NCBI Gene
  100040141

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000106654	Ensembl Gene Model | MGI Sequence Detail	286	C57BL/6J
transcript	ENSMUST00000199229	Ensembl | MGI Sequence Detail	286	Not Applicable

References

• Summaries
  All 13

  Diseases 1

  Phenotypes 9
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:100332 Wilson L, et al., Random mutagenesis of proximal mouse chromosome 5 uncovers predominantly embryonic lethal mutations. Genome Res. 2005 Aug;15(8):1095-105

TSS for Gm2623:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr45796	Chr5:32995439-32995451 (+)	-28 bp