Gm2788 Gene Detail

Summary

• Symbol
  Gm2788
• Name
  predicted gene 2788

• Feature Type
  lncRNA gene
• IDs
  MGI:3780956
  NCBI Gene: 108167326
• Alliance
  gene page
• Transcription Start Sites
  5 TSS

Location &
Maps

• Sequence Map
  Chr7:48527717-48559904 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 31.11 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1184 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3780956	lncRNA gene	Chr7:48527656-48562788 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015668	unclassified non-coding RNA gene	Chr7:49485337-49493943 (+)
A/J	MGP_AJ_G0015647	unclassified non-coding RNA gene	Chr7:48790596-48799236 (+)
AKR/J	MGP_AKRJ_G0015610	unclassified non-coding RNA gene	Chr7:49935731-49944313 (+)
BALB/cJ	MGP_BALBcJ_G0015608	unclassified non-coding RNA gene	Chr7:48437183-48445775 (+)
C3H/HeJ	MGP_C3HHeJ_G0015430	unclassified non-coding RNA gene	Chr7:50308119-50316703 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0016062	unclassified non-coding RNA gene	Chr7:51790398-51798989 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013792	unclassified non-coding RNA gene	Chr7:51964515-51973182 (+)
CAST/EiJ	MGP_CASTEiJ_G0014985	unclassified non-coding RNA gene	Chr7:41689712-41698363 (+)
CBA/J	MGP_CBAJ_G0015411	unclassified non-coding RNA gene	Chr7:53526002-53534584 (+)
DBA/2J	MGP_DBA2J_G0015506	unclassified non-coding RNA gene	Chr7:47999704-48008284 (+)
FVB/NJ	MGP_FVBNJ_G0015513	unclassified non-coding RNA gene	Chr7:47928388-47937003 (+)
LP/J	MGP_LPJ_G0015586	unclassified non-coding RNA gene	Chr7:50448959-50457613 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015535	unclassified non-coding RNA gene	Chr7:52649290-52657917 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0016104	unclassified non-coding RNA gene	Chr7:48913710-48922290 (+)
PWK/PhJ	MGP_PWKPhJ_G0014767	unclassified non-coding RNA gene	Chr7:41335312-41344534 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014556	unclassified non-coding RNA gene	Chr7:37084687-37093283 (+)
WSB/EiJ	MGP_WSBEiJ_G0015090	unclassified non-coding RNA gene	Chr7:49569747-49578394 (+)

Homology

• Gene Tree
  Gm2788
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  4
• Gene trapped
  4
• Find Mice (IMSR)
  1 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  53
• RefSeq
  4

• Ensembl
  ENSMUSG00000085995 (Evidence)
• NCBI Gene
  108167326

Representative Sequences			Length	Strain/Species
genomic	108167326	NCBI Gene Model | MGI Sequence Detail	32188	C57BL/6J
transcript	NR_170897	RefSeq | MGI Sequence Detail	1433	C57BL/6

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 10

  Phenotypes 3
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm2788:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr66766	Chr7:48527703-48527722 (+)	-4 bp
Tssr66767	Chr7:48527725-48527728 (+)	10 bp
Tssr66768	Chr7:48531080-48531113 (+)	3,380 bp
Tssr66769	Chr7:48531612-48531614 (+)	3,896 bp
Tssr66770	Chr7:48534557-48534564 (+)	6,844 bp