Gm2800 Gene Detail

Summary

• Symbol
  Gm2800
• Name
  predicted gene 2800

• Feature Type
  lncRNA gene
• IDs
  MGI:3780969
  NCBI Gene: 100040484
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr12:107149807-107152995 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, 57.89 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  238 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3780969	lncRNA gene	Chr12:107149807-107152995 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0005403	lincRNA gene	Chr12:109202964-109206143 (+)
A/J	MGP_AJ_G0005386	lincRNA gene	Chr12:105095237-105098416 (+)
AKR/J	MGP_AKRJ_G0005366	lincRNA gene	Chr12:108154172-108157351 (+)
BALB/cJ	MGP_BALBcJ_G0005368	lincRNA gene	Chr12:105507795-105510976 (+)
C3H/HeJ	MGP_C3HHeJ_G0005317	lincRNA gene	Chr12:108587513-108590694 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0005522	lincRNA gene	Chr12:112550075-112553254 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004907	lincRNA gene	Chr12:101652754-101655856 (+)
CAST/EiJ	MGP_CASTEiJ_G0005261	lincRNA gene	Chr12:103456423-103460326 (+)
CBA/J	MGP_CBAJ_G0005306	lincRNA gene	Chr12:117045889-117049068 (+)
DBA/2J	MGP_DBA2J_G0005323	lincRNA gene	Chr12:104602353-104605532 (+)
FVB/NJ	MGP_FVBNJ_G0005349	lincRNA gene	Chr12:103396155-103399344 (+)
LP/J	MGP_LPJ_G0005405	lincRNA gene	Chr12:109068794-109071973 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0005331	lincRNA gene	Chr12:120323560-120326739 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0005523	lincRNA gene	Chr12:107567713-107570892 (+)
PWK/PhJ	MGP_PWKPhJ_G0005210	lincRNA gene	Chr12:99217389-99220687 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0005131	lincRNA gene	Chr12:101796735-101799929 (+)
WSB/EiJ	MGP_WSBEiJ_G0005311	lincRNA gene	Chr12:108511500-108516454 (+)

Homology

• Gene Tree
  Gm2800
  

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000084871 (Evidence)
• NCBI Gene
  100040484

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000084871	Ensembl Gene Model | MGI Sequence Detail	3189	C57BL/6J
transcript	ENSMUST00000122988	Ensembl | MGI Sequence Detail	650	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 6
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm2800:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr114942	Chr12:107149807-107149825 (+)	9 bp