Gm2962 Pseudogene Detail

Summary

• Symbol
  Gm2962
• Name
  predicted pseudogene 2962

• Feature Type
  pseudogene
• IDs
  MGI:3781140
  NCBI Gene: 100504052
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:170752878-170753213 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 77.72 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  103 from dbSNP Build 142
• Strain Annotations
  15

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3781140	pseudogene	Chr1:170752746-170753229 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0010436	pseudogene	Chr1:176676095-176676430 (-)
A/J	MGP_AJ_G0010426	pseudogene	Chr1:169475414-169475749 (-)
AKR/J	MGP_AKRJ_G0010394	pseudogene	Chr1:174548927-174549262 (-)
BALB/cJ	MGP_BALBcJ_G0010401	pseudogene	Chr1:169931759-169932094 (-)
C3H/HeJ	MGP_C3HHeJ_G0010332	pseudogene	Chr1:174803037-174803372 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0010674	pseudogene	Chr1:182525662-182525997 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0011161	pseudogene	Chr17:23699343-23699679 (-)
DBA/2J	MGP_DBA2J_G0010332	pseudogene	Chr1:168313455-168313790 (-)
FVB/NJ	MGP_FVBNJ_G0011213	pseudogene	Chr17:20751616-20751952 (-)
LP/J	MGP_LPJ_G0010419	pseudogene	Chr1:177794997-177795332 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0010319	pseudogene	Chr1:196324002-196324337 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0010642	pseudogene	Chr1:174447865-174448200 (-)
PWK/PhJ	MGP_PWKPhJ_G0010055	pseudogene	Chr1:167567226-167567640 (-)
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0010224	pseudogene	Chr1:174569204-174569861 (-)

Homology

• Gene Tree
  Gm2962
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  2
• Genomic Mutations
  2 involving Gm2962
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  3 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19
• RefSeq
  1

• Ensembl
  ENSMUSG00000089838 (Evidence)
• NCBI Gene
  100504052

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000089838	Ensembl Gene Model | MGI Sequence Detail	336	C57BL/6J
transcript	ENSMUST00000159266	Ensembl | MGI Sequence Detail	336	Not Applicable

References

• Summaries
  All 6

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm2962:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr14945	Chr1:170753225-170753228 (-)	-14 bp