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Lichi Gene Detail
Summary
  • Symbol
    Lichi
  • Name
    long non-coding RNA in Chat intron
  • Synonyms
    Gm2990, Litchi
Location &
Maps
more
  • Sequence Map
    Chr14:32186999-32205505 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 14, 19.40 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    631 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3781168
 lncRNA gene Chr14:32186999-32205505 (+)
129S1/SvImJ MGP_129S1SvImJ_G0005532
 lincRNA gene Chr14:25714898-25733388 (+)
A/J MGP_AJ_G0005518
 lincRNA gene Chr14:24731168-24749670 (+)
AKR/J MGP_AKRJ_G0005497
 lincRNA gene Chr14:25883591-25902086 (+)
BALB/cJ MGP_BALBcJ_G0005500
 lincRNA gene Chr14:24912693-24931349 (+)
C3H/HeJ MGP_C3HHeJ_G0005447
 lincRNA gene Chr14:25760000-25778757 (+)
C57BL/6NJ MGP_C57BL6NJ_G0005655
 lincRNA gene Chr14:26735317-26753815 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0005026
 lincRNA gene Chr14:24800102-24818615 (+)
CAST/EiJ MGP_CASTEiJ_G0005389
 lincRNA gene Chr14:25556173-25574839 (+)
CBA/J MGP_CBAJ_G0005436
 lincRNA gene Chr14:27740378-27758917 (+)
DBA/2J MGP_DBA2J_G0005452
 lincRNA gene Chr14:24760934-24779762 (+)
FVB/NJ MGP_FVBNJ_G0005478
 lincRNA gene Chr14:24723828-24742316 (+)
LP/J MGP_LPJ_G0005536
 lincRNA gene Chr14:26035498-26053994 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0005462
 lincRNA gene Chr14:26946763-26965257 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0005655
 lincRNA gene Chr14:25673663-25692162 (+)
PWK/PhJ MGP_PWKPhJ_G0005340
 lincRNA gene Chr14:24237778-24256762 (+)
SPRET/EiJ MGP_SPRETEiJ_G0005258
 lincRNA gene Chr14:25283356-25304253 (+)
WSB/EiJ MGP_WSBEiJ_G0005439
 lincRNA gene Chr14:25730607-25749099 (+)



Homology
less
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
    5
  • GO References
    1
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    1
  • Literature Summary
    1
Sequences &
Gene Models
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  • All Sequences
    23
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000097794 Ensembl Gene Model | MGI Sequence Detail 18507 C57BL/6J ±  kb
transcript ENSMUST00000180662 Ensembl | MGI Sequence Detail 1118 Not Applicable  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 1
    cDNA 1

    Microarray probesets 1
Other
Accession IDs
less
MGI:7714888
References
more
  • Summaries
    All 9
    Developmental Gene Expression 1
    Gene Ontology 1
  • Earliest
    J:345795 Hsu HC, et al., LncRNA Litchi is a regulator for harmonizing maturity and resilient functionality in spinal motor neurons. iScience. 2024 Mar 15;27(3):109207
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory