Gm3096 Pseudogene Detail

Summary

• Symbol
  Gm3096
• Name
  predicted gene 3096

• Feature Type
  pseudogene
• IDs
  MGI:3781272
  NCBI Gene: 100041013
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr9:100935595-100935958 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, 53.15 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  109 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3781272	pseudogene	Chr9:100935575-100936177 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0014237	pseudogene	Chr9:102534633-102534983 (+)
A/J	MGP_AJ_G0014253	pseudogene	Chr9:98901366-98901729 (+)
AKR/J	MGP_AKRJ_G0014178	pseudogene	Chr9:101307605-101307955 (+)
BALB/cJ	MGP_BALBcJ_G0014203	pseudogene	Chr9:98586960-98587323 (+)
C3H/HeJ	MGP_C3HHeJ_G0014034	pseudogene	Chr9:101744810-101745173 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0014656	pseudogene	Chr9:105464773-105465136 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0012466	pseudogene	Chr9:96542678-96543040 (+)
CAST/EiJ	MGP_CASTEiJ_G0013689	pseudogene	Chr9:101546135-101546496 (+)
CBA/J	MGP_CBAJ_G0014015	pseudogene	Chr9:109127016-109127366 (+)
DBA/2J	MGP_DBA2J_G0014100	pseudogene	Chr9:98390793-98391156 (+)
FVB/NJ	MGP_FVBNJ_G0014099	pseudogene	Chr9:97191953-97192303 (+)
LP/J	MGP_LPJ_G0014187	pseudogene	Chr9:102752299-102752662 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0014134	pseudogene	Chr9:111012927-111013290 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0014627	pseudogene	Chr9:101580163-101580526 (+)
PWK/PhJ	MGP_PWKPhJ_G0013502	pseudogene	Chr9:98627436-98627797 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0013291	pseudogene	Chr9:101626888-101627249 (+)
WSB/EiJ	MGP_WSBEiJ_G0013748	pseudogene	Chr9:101451692-101452042 (+)

Homology

• Gene Tree
  Gm3096
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm3096
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000100563 (Evidence)
• NCBI Gene
  100041013

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000100563	Ensembl Gene Model | MGI Sequence Detail	364	C57BL/6J
transcript	ENSMUST00000185770	Ensembl | MGI Sequence Detail	364	Not Applicable

References

• Summaries
  All 6

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm3096:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr86715	Chr9:100935567-100935587 (+)	-18 bp