Gm3160 Pseudogene Detail

Summary

• Symbol
  Gm3160
• Name
  predicted pseudogene 3160

• Feature Type
  pseudogene
• IDs
  MGI:3781339
  NCBI Gene: 100041140
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr8:14186310-14186916 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, 6.53 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  98 from dbSNP Build 142
• Strain Annotations
  13

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3781339	pseudogene	Chr8:14186151-14187412 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0014045	pseudogene	Chr8:11517610-11518216 (+)
A/J	MGP_AJ_G0014060	pseudogene	Chr8:11112471-11113070 (+)
AKR/J	MGP_AKRJ_G0013995	pseudogene	Chr8:11384600-11385206 (+)
BALB/cJ	MGP_BALBcJ_G0014017	pseudogene	Chr8:11208684-11209290 (+)
C3H/HeJ	no annotation
C57BL/6NJ	MGP_C57BL6NJ_G0014451	pseudogene	Chr8:11902463-11903069 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0012730	pseudogene	Chr5:97863812-97864425 (-)
CBA/J	MGP_CBAJ_G0013832	pseudogene	Chr8:12396727-12397333 (+)
DBA/2J	MGP_DBA2J_G0013910	pseudogene	Chr8:11045909-11046515 (+)
FVB/NJ	MGP_FVBNJ_G0013909	pseudogene	Chr8:11062486-11063092 (+)
LP/J	MGP_LPJ_G0013993	pseudogene	Chr8:11502800-11503405 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0013936	pseudogene	Chr8:12632294-12632900 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0014424	pseudogene	Chr8:11486347-11486953 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm3160
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  17
• RefSeq
  1

• Ensembl
  ENSMUSG00000085371 (Evidence)
• NCBI Gene
  100041140

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000085371	Ensembl Gene Model | MGI Sequence Detail	607	C57BL/6J
transcript	ENSMUST00000128343	Ensembl | MGI Sequence Detail	607	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm3160:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr76439	Chr8:14186152-14186155 (+)	-156 bp