Gimap1os Gene Detail

Summary

• Symbol
  Gimap1os
• Name
  GTPase, IMAP family member 1, opposite strand
• Synonyms
  Gm3345

• Feature Type
  lncRNA gene
• IDs
  MGI:3781523
  NCBI Gene: 100041450
• Alliance
  gene page
• Transcription Start Sites
  14 TSS

Location &
Maps

• Sequence Map
  Chr6:48715266-48718378 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 23.70 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  268 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3781523	lncRNA gene	Chr6:48715266-48718378 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0015628	unclassified non-coding RNA gene	Chr6:47695743-47698836 (-)
A/J	MGP_AJ_G0015604	unclassified non-coding RNA gene	Chr6:45529800-45533813 (-)
AKR/J	MGP_AKRJ_G0015567	unclassified non-coding RNA gene	Chr6:47128642-47131740 (-)
BALB/cJ	MGP_BALBcJ_G0015566	unclassified non-coding RNA gene	Chr6:45861875-45864962 (-)
C3H/HeJ	MGP_C3HHeJ_G0015388	unclassified non-coding RNA gene	Chr6:47137982-47142086 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0016019	unclassified non-coding RNA gene	Chr6:48817036-48820128 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013753	unclassified non-coding RNA gene	Chr6:43158333-43161354 (-)
CAST/EiJ	MGP_CASTEiJ_G0014944	unclassified non-coding RNA gene	Chr6:46860241-46863309 (-)
CBA/J	MGP_CBAJ_G0015369	unclassified non-coding RNA gene	Chr6:50838336-50841433 (-)
DBA/2J	MGP_DBA2J_G0015463	unclassified non-coding RNA gene	Chr6:45446493-45449589 (-)
FVB/NJ	MGP_FVBNJ_G0015470	unclassified non-coding RNA gene	Chr6:45080018-45083116 (-)
LP/J	MGP_LPJ_G0015544	unclassified non-coding RNA gene	Chr6:47675045-47678142 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015493	unclassified non-coding RNA gene	Chr6:53651435-53654517 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0016062	unclassified non-coding RNA gene	Chr6:46996308-46999400 (-)
PWK/PhJ	MGP_PWKPhJ_G0014728	unclassified non-coding RNA gene	Chr6:44978173-44981387 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0014517	unclassified non-coding RNA gene	Chr6:46342337-46345598 (-)
WSB/EiJ	MGP_WSBEiJ_G0015048	unclassified non-coding RNA gene	Chr6:46997547-47000639 (-)

Homology

• Gene Tree
  Gimap1os
  

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  4

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23

• Ensembl
  ENSMUSG00000044867 (Evidence)
• NCBI Gene
  100041450

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000044867	Ensembl Gene Model | MGI Sequence Detail	3113	C57BL/6J
transcript	ENSMUST00000205172	Ensembl | MGI Sequence Detail	1944	Not Applicable

Molecular
Reagents

• All nucleic 4

  cDNA 4

References

• Summaries
  All 7
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:57747 MGI Genome Annotation Group and UniGene Staff, MGI-UniGene Interconnection Effort. Database Download. 2015;

TSS for Gimap1os:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr60778	Chr6:48718944-48718964 (-)	-576 bp
Tssr60777	Chr6:48718396-48718407 (-)	-24 bp
Tssr60776	Chr6:48718368-48718383 (-)	2 bp
Tssr60775	Chr6:48718262-48718278 (-)	108 bp
Tssr60774	Chr6:48717698-48717708 (-)	675 bp
Tssr60773	Chr6:48717547-48717566 (-)	821 bp
Tssr60772	Chr6:48716393-48716397 (-)	1,983 bp
Tssr60771	Chr6:48716178-48716189 (-)	2,194 bp
Tssr60770	Chr6:48716141-48716155 (-)	2,230 bp
Tssr60769	Chr6:48716121-48716138 (-)	2,248 bp
Tssr60768	Chr6:48715886-48715900 (-)	2,485 bp
Tssr60767	Chr6:48715851-48715866 (-)	2,519 bp
Tssr60766	Chr6:48715839-48715847 (-)	2,535 bp
Tssr60765	Chr6:48715817-48715833 (-)	2,553 bp