Gm3436 Pseudogene Detail

Summary

• Symbol
  Gm3436
• Name
  predicted pseudogene 3436

• Feature Type
  pseudogene
• IDs
  MGI:3781613
  NCBI Gene: 100041622
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr9:70759858-70760697 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, 39.64 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  123 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3781613	pseudogene	Chr9:70759833-70761762 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0014155	pseudogene	Chr9:70975662-70976504 (+)
A/J	MGP_AJ_G0014173	pseudogene	Chr9:68488279-68489121 (+)
AKR/J	MGP_AKRJ_G0014097	pseudogene	Chr9:70110549-70111391 (+)
BALB/cJ	MGP_BALBcJ_G0014122	pseudogene	Chr9:68203603-68204980 (+)
C3H/HeJ	MGP_C3HHeJ_G0013953	pseudogene	Chr9:70639972-70640814 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0014566	pseudogene	Chr9:72856274-72859005 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0010043	pseudogene	Chr15:77116600-77122777 (-)
CAST/EiJ	MGP_CASTEiJ_G0013613	pseudogene	Chr9:70914446-70915288 (+)
CBA/J	MGP_CBAJ_G0013936	pseudogene	Chr9:75377006-75378181 (+)
DBA/2J	MGP_DBA2J_G0014019	pseudogene	Chr9:68226804-68227646 (+)
FVB/NJ	MGP_FVBNJ_G0014018	pseudogene	Chr9:67549460-67551089 (+)
LP/J	MGP_LPJ_G0014102	pseudogene	Chr9:71197832-71198622 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0010350	pseudogene	Chr1:216252392-216253554 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0014539	pseudogene	Chr9:70264983-70266526 (+)
PWK/PhJ	MGP_PWKPhJ_G0013429	pseudogene	Chr9:68478155-68479059 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0010585	pseudogene	Chr15:82801659-82807469 (-)
WSB/EiJ	MGP_WSBEiJ_G0013671	pseudogene	Chr9:70166620-70167462 (+)

Homology

• Gene Tree
  Gm3436
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm3436
• Find Mice (IMSR)
  2 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000096160 (Evidence)
• NCBI Gene
  100041622

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000096160	Ensembl Gene Model | MGI Sequence Detail	840	C57BL/6J
transcript	ENSMUST00000179930	Ensembl | MGI Sequence Detail	840	Not Applicable

References

• Summaries
  All 6

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm3436:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr85939	Chr9:70759827-70759856 (+)	-16 bp