Gm3470 Pseudogene Detail

Summary

• Symbol
  Gm3470
• Name
  predicted gene 3470

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:3781646
  NCBI Gene: 100041680
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:99169662-99170081 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 48.46 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  128 from dbSNP Build 142
• Strain Annotations
  11

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3781646	pseudogene	Chr5:99169531-99171649 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0013189	pseudogene	Chr5:100401289-100401708 (-)
A/J	MGP_AJ_G0013174	pseudogene	Chr5:96691792-96692211 (-)
AKR/J	no annotation
BALB/cJ	MGP_BALBcJ_G0013155	pseudogene	Chr5:97706848-97707267 (-)
C3H/HeJ	MGP_C3HHeJ_G0013002	pseudogene	Chr5:100219692-100220111 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0013518	pseudogene	Chr5:104626339-104626758 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	MGP_DBA2J_G0013054	pseudogene	Chr5:96883684-96884103 (-)
FVB/NJ	MGP_FVBNJ_G0013056	pseudogene	Chr5:95696482-95697402 (-)
LP/J	MGP_LPJ_G0013124	pseudogene	Chr5:101013076-101013495 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0013075	pseudogene	Chr5:113344515-113344934 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0013520	pseudogene	Chr5:99341983-99342402 (-)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm3470
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Radiation induced
  1
• Spontaneous
  1
• Genomic Mutations
  3 involving Gm3470
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  16
• RefSeq
  2

• Ensembl
  ENSMUSG00000089659 (Evidence)
• NCBI Gene
  100041680

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000089659	Ensembl Gene Model | MGI Sequence Detail	420	C57BL/6J
transcript	ENSMUST00000160819	Ensembl | MGI Sequence Detail	420	Not Applicable
polypeptide	XP_036021560	RefSeq | MGI Sequence Detail	141	C57BL/6J

References

• Summaries
  All 10

  Phenotypes 6
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17

TSS for Gm3470:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr52020	Chr5:99169884-99169922 (-)	178 bp