Gm3496 Pseudogene Detail

Summary

• Symbol
  Gm3496
• Name
  predicted gene 3496

• Feature Type
  pseudogene
• IDs
  MGI:3781673
  NCBI Gene: 100041752
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr1:44963309-44964053 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 23.63 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  141 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3781673	pseudogene	Chr1:44963309-44977767 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0010102	pseudogene	Chr1:43946733-43947477 (-)
A/J	MGP_AJ_G0010089	pseudogene	Chr1:42623797-42624541 (-)
AKR/J	MGP_AKRJ_G0010071	pseudogene	Chr1:43217194-43217938 (-)
BALB/cJ	MGP_BALBcJ_G0010077	pseudogene	Chr1:42247929-42248673 (-)
C3H/HeJ	MGP_C3HHeJ_G0010007	pseudogene	Chr1:43624640-43625384 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0010326	pseudogene	Chr1:45745712-45746456 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0009086	pseudogene	Chr1:39375494-39376218 (-)
CAST/EiJ	MGP_CASTEiJ_G0009838	pseudogene	Chr1:43564320-43565064 (-)
CBA/J	MGP_CBAJ_G0009977	pseudogene	Chr1:47072735-47073479 (-)
DBA/2J	MGP_DBA2J_G0010002	pseudogene	Chr1:41900185-41900929 (-)
FVB/NJ	MGP_FVBNJ_G0010028	pseudogene	Chr1:41378073-41378817 (-)
LP/J	MGP_LPJ_G0010093	pseudogene	Chr1:44304604-44305348 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0009986	pseudogene	Chr1:49115299-49116043 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0010304	pseudogene	Chr1:43415864-43416608 (-)
PWK/PhJ	MGP_PWKPhJ_G0009748	pseudogene	Chr1:41719837-41720581 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0009562	pseudogene	Chr1:43421855-43424087 (-)
WSB/EiJ	MGP_WSBEiJ_G0009906	pseudogene	Chr1:43400279-43401023 (-)

Homology

• Gene Tree
  Gm3496
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm3496
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000101251 (Evidence)
• NCBI Gene
  100041752

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000101251	Ensembl Gene Model | MGI Sequence Detail	745	C57BL/6J
transcript	ENSMUST00000188283	Ensembl | MGI Sequence Detail	745	Not Applicable

References

• Summaries
  All 6

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;