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Rpl27rt Gene Detail
Summary
  • Symbol
    Rpl27rt
  • Name
    ribosomal protein L29, retrotransposed
  • Synonyms
    Gm3550
Location &
Maps
more
  • Sequence Map
    Chr18:34870421-34871067 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 18, 18.71 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    120 from dbSNP Build 142
  • Strain Annotations
    10
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3781727
 protein coding gene Chr18:34869412-34871067 (+)
129S1/SvImJ MGP_129S1SvImJ_G0024249
 protein coding gene Chr18:32970509-32971935 (+)
A/J MGP_AJ_G0024215
 protein coding gene Chr18:31850846-31852322 (+)
AKR/J no annotation
BALB/cJ MGP_BALBcJ_G0024215
 protein coding gene Chr18:31910512-31911874 (+)
C3H/HeJ no annotation
C57BL/6NJ MGP_C57BL6NJ_G0024657
 protein coding gene Chr18:34241103-34242546 (+)
CAROLI/EiJ no annotation
CAST/EiJ no annotation
CBA/J no annotation
DBA/2J no annotation
FVB/NJ MGP_FVBNJ_G0024049
 protein coding gene Chr18:31192100-31193447 (+)
LP/J MGP_LPJ_G0024164
 protein coding gene Chr18:33051321-33052678 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0024077
 protein coding gene Chr18:36429438-36430824 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0024705
 protein coding gene Chr18:32584758-32586205 (+)
PWK/PhJ MGP_PWKPhJ_G0023201
 protein coding gene Chr18:31709426-31711254 (+)
SPRET/EiJ no annotation
WSB/EiJ no annotation



Homology
more
  • Human Ortholog
    RPL29, ribosomal protein L29
  • Vertebrate Orthologs
    5
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    RPL29, ribosomal protein L29
  • Synonyms
    eL29, HIP, HUMRPL29, L29, RPL29_3_370, RPL29P10
  • Links
    NCBI Gene ID: 6159
    neXtProt AC: NX_P47914
    UniProt: P47914

  • Chr Location
    3p21.2; chr3:51993522-51995895 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    8
  • GO References
    3
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
Sequences &
Gene Models
less
  • All Sequences
    16
  • RefSeq
    1
  • UniProt
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 100041859 NCBI Gene Model | MGI Sequence Detail 647 C57BL/6J ±  kb
polypeptide W4VSN7 UniProt | EBI | MGI Sequence Detail 160 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • InterPro Domains
    IPR002673 Large ribosomal subunit protein eL29
Other
Accession IDs
less
MGI:7466660
References
more
  • Summaries
    All 8
    Gene Ontology 3
  • Earliest
    J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
  • Latest
    J:155856 The Gene Ontology Consortium, Automated transfer of experimentally-verified manual GO annotation data to mouse-rat orthologs. 2014;
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory