Gm3551 Pseudogene Detail

Summary

• Symbol
  Gm3551
• Name
  predicted gene 3551

• Feature Type
  pseudogene
• IDs
  MGI:3781728
  NCBI Gene: 100041863
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr1:119825191-119825854 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 52.53 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  101 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3781728	pseudogene	Chr1:119825191-119825936 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0010319	pseudogene	Chr1:122671873-122672536 (+)
A/J	MGP_AJ_G0010309	pseudogene	Chr1:118274244-118274907 (+)
AKR/J	MGP_AKRJ_G0010278	pseudogene	Chr1:121761457-121762120 (+)
BALB/cJ	MGP_BALBcJ_G0010284	pseudogene	Chr1:118534138-118534801 (+)
C3H/HeJ	MGP_C3HHeJ_G0010220	pseudogene	Chr1:121920497-121921160 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0010560	pseudogene	Chr1:127343802-127344465 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0009248	pseudogene	Chr1:111923934-111924647 (+)
CAST/EiJ	MGP_CASTEiJ_G0010043	pseudogene	Chr1:120705453-120706116 (+)
CBA/J	MGP_CBAJ_G0010189	pseudogene	Chr1:131751474-131752137 (+)
DBA/2J	MGP_DBA2J_G0010222	pseudogene	Chr1:117296361-117297024 (+)
FVB/NJ	MGP_FVBNJ_G0010245	pseudogene	Chr1:116046256-116046919 (+)
LP/J	MGP_LPJ_G0010305	pseudogene	Chr1:124011698-124012361 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0010201	pseudogene	Chr1:137506268-137506931 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0010522	pseudogene	Chr1:121470811-121471474 (+)
PWK/PhJ	MGP_PWKPhJ_G0009946	pseudogene	Chr1:116272355-116273018 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0009761	pseudogene	Chr1:120358168-120358831 (+)
WSB/EiJ	MGP_WSBEiJ_G0010110	pseudogene	Chr1:121353898-121354561 (+)

Homology

• Gene Tree
  Gm3551
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  2
• Gene trapped
  1
• Radiation induced
  1
• Genomic Mutations
  3 involving Gm3551
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000100636 (Evidence)
• NCBI Gene
  100041863

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000100636	Ensembl Gene Model | MGI Sequence Detail	664	C57BL/6J
transcript	ENSMUST00000190750	Ensembl | MGI Sequence Detail	664	Not Applicable

References

• Summaries
  All 10

  Phenotypes 6
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14