Gm3555 Pseudogene Detail

Summary

• Symbol
  Gm3555
• Name
  predicted pseudogene 3555

• Feature Type
  pseudogene
• IDs
  MGI:3781732
  NCBI Gene: 100041868
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:98385493-98386887 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 47.76 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  159 from dbSNP Build 142
• Strain Annotations
  8

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3781732	pseudogene	Chr1:98385432-98387715 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0010254	pseudogene	Chr1:100236696-100238229 (+)
A/J	no annotation
AKR/J	no annotation
BALB/cJ	MGP_BALBcJ_G0013745	pseudogene	Chr6:145521432-145540792 (+)
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	MGP_CAROLIEiJ_G0012085	pseudogene	Chr6:144487415-144507672 (+)
CAST/EiJ	MGP_CASTEiJ_G0013260	pseudogene	Chr6:149805331-149816388 (+)
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	MGP_LPJ_G0013713	pseudogene	Chr6:151877289-151889903 (+)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	MGP_PWKPhJ_G0013070	pseudogene	Chr6:143077205-143087132 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0012848	pseudogene	Chr6:148090904-148100445 (+)
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm3555
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm3555
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  12
• RefSeq
  1

• Ensembl
  ENSMUSG00000089791 (Evidence)
• NCBI Gene
  100041868

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000089791	Ensembl Gene Model | MGI Sequence Detail	1395	C57BL/6J
transcript	ENSMUST00000160287	Ensembl | MGI Sequence Detail	1395	Not Applicable

References

• Summaries
  All 8

  Phenotypes 4
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:7938 Juriloff DM, et al., Genetic and developmental studies of a new mouse mutation that produces otocephaly. J Craniofac Genet Dev Biol. 1985;5(2):121-45

TSS for Gm3555:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr8237	Chr1:98385440-98385473 (+)	-36 bp