Gm3646 Gene Detail

Summary

• Symbol
  Gm3646
• Name
  predicted gene 3646

• Feature Type
  lncRNA gene
• IDs
  MGI:3781822
  NCBI Gene: 100042065
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:39843308-39844492 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 18.50 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  122 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3781822	lncRNA gene	Chr1:39843298-39844500 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0015962	protein coding gene	Chr1:38566785-38567962 (-)
A/J	MGP_AJ_G0015946	protein coding gene	Chr1:37477329-37478504 (-)
AKR/J	MGP_AKRJ_G0015901	protein coding gene	Chr1:37980825-37982009 (-)
BALB/cJ	MGP_BALBcJ_G0015900	protein coding gene	Chr1:37126290-37127474 (-)
C3H/HeJ	MGP_C3HHeJ_G0015733	protein coding gene	Chr1:38247422-38248597 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0016353	protein coding gene	Chr1:40161232-40162416 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0014075	protein coding gene	Chr1:34435727-34436910 (-)
CAST/EiJ	MGP_CASTEiJ_G0015314	protein coding gene	Chr1:38146592-38147775 (-)
CBA/J	MGP_CBAJ_G0015705	protein coding gene	Chr1:41333013-41334197 (-)
DBA/2J	MGP_DBA2J_G0015806	protein coding gene	Chr1:36770718-36771902 (-)
FVB/NJ	MGP_FVBNJ_G0015808	protein coding gene	Chr1:36307101-36308278 (-)
LP/J	MGP_LPJ_G0015876	protein coding gene	Chr1:38904449-38905633 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015828	protein coding gene	Chr1:43370763-43371940 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0016400	protein coding gene	Chr1:38108412-38109589 (-)
PWK/PhJ	MGP_PWKPhJ_G0015097	protein coding gene	Chr1:36586992-36588239 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0014879	protein coding gene	Chr1:38043668-38044845 (-)
WSB/EiJ	MGP_WSBEiJ_G0015376	protein coding gene	Chr1:38071364-38072548 (-)

Homology

• Gene Tree
  Gm3646
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm3646
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  1 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1
• CCDS
  CCDS56625.1

• Ensembl
  ENSMUSG00000091937 (Evidence)
• NCBI Gene
  100042065

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000091937	Ensembl Gene Model | MGI Sequence Detail	1185	C57BL/6J
transcript	ENSMUST00000171319	Ensembl | MGI Sequence Detail	352	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 9

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:155721 Mouse Genome Informatics (MGI) and The National Center for Biotechnology Information (NCBI), Consensus CDS project. Database Download. 2010;

TSS for Gm3646:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr11412	Chr1:39844471-39844505 (-)	4 bp