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Trav4-1 Pseudogene Detail
Summary
  • Symbol
    Trav4-1
  • Name
    T cell receptor alpha variable 4-1
  • Feature Type
    pseudogenic gene segment
  • IDs
    MGI:3781986
    NCBI Gene: 100042384
  • Alliance
    gene page
Location &
Maps
more
  • Sequence Map
    Chr14:52844764-52845261 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 14, 27.01 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    45 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3781986
 pseudogenic gene segment Chr14:52844764-52845261 (+)
129S1/SvImJ MGP_129S1SvImJ_G0002608
 pseudogenic gene segment Chr14:46664487-46664985 (+)
A/J MGP_AJ_G0002584
 pseudogenic gene segment Chr14:45445565-45446063 (+)
AKR/J MGP_AKRJ_G0002565
 pseudogenic gene segment Chr14:47097366-47097864 (+)
BALB/cJ MGP_BALBcJ_G0002571
 pseudogenic gene segment Chr14:45558355-45558853 (+)
C3H/HeJ MGP_C3HHeJ_G0002535
 pseudogenic gene segment Chr14:46857905-46858403 (+)
C57BL/6NJ MGP_C57BL6NJ_G0002712
 pseudogenic gene segment Chr14:48734302-48734799 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0002270
 pseudogenic gene segment Chr14:44562028-44562531 (-)
CAST/EiJ MGP_CASTEiJ_G0002507
 pseudogenic gene segment Chr14:43823357-43823856 (+)
CBA/J MGP_CBAJ_G0002529
 pseudogenic gene segment Chr14:50224820-50225318 (+)
DBA/2J MGP_DBA2J_G0002533
 pseudogenic gene segment Chr14:45211769-45212266 (+)
FVB/NJ MGP_FVBNJ_G0002558
 pseudogenic gene segment Chr14:44787191-44787688 (+)
LP/J MGP_LPJ_G0002609
 pseudogenic gene segment Chr14:47295515-47296013 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0002542
 pseudogenic gene segment Chr14:49652469-49652966 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0002717
 pseudogenic gene segment Chr14:46439191-46439689 (+)
PWK/PhJ MGP_PWKPhJ_G0002469
 pseudogenic gene segment Chr14:41965584-41966082 (+)
SPRET/EiJ MGP_SPRETEiJ_G0002419
 pseudogenic gene segment Chr14:42483647-42484140 (+)
WSB/EiJ MGP_WSBEiJ_G0002535
 pseudogenic gene segment Chr14:46761530-46762028 (+)



Homology
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Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    2 phenotype references
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
Sequences &
Gene Models
less
  • All Sequences
    23
  • RefSeq
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 100042384 NCBI Gene Model | MGI Sequence Detail 498 C57BL/6J ±  kb
For the selected sequence
Molecular
Reagents
less

  • Microarray probesets 1
References
more
  • Summaries
    All 9
    Phenotypes 2
  • Earliest
    J:164272 Giudicelli V, et al., IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D256-61
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory