Gm3828 Pseudogene Detail

Summary

• Symbol
  Gm3828
• Name
  predicted gene 3828

• Feature Type
  pseudogene
• IDs
  MGI:3782000
  NCBI Gene: 118567793
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr10:80790288-80790544 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, 39.72 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  94 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3782000	pseudogene	Chr10:80789762-80796243 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0010536	pseudogene	Chr10:81628087-81628343 (-)
A/J	MGP_AJ_G0010529	pseudogene	Chr10:78748067-78748323 (-)
AKR/J	MGP_AKRJ_G0010488	pseudogene	Chr10:80910380-80910636 (-)
BALB/cJ	MGP_BALBcJ_G0010503	pseudogene	Chr10:78963883-78964139 (-)
C3H/HeJ	MGP_C3HHeJ_G0010426	pseudogene	Chr10:80997926-80998182 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0010771	pseudogene	Chr10:84426895-84427151 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0009439	pseudogene	Chr10:74957715-74957971 (-)
CAST/EiJ	MGP_CASTEiJ_G0010250	pseudogene	Chr10:81230516-81230772 (-)
CBA/J	MGP_CBAJ_G0010395	pseudogene	Chr10:87704376-87704632 (-)
DBA/2J	MGP_DBA2J_G0010428	pseudogene	Chr10:77948538-77948794 (-)
FVB/NJ	MGP_FVBNJ_G0010445	pseudogene	Chr10:77180332-77180588 (-)
LP/J	MGP_LPJ_G0010518	pseudogene	Chr10:82086414-82086670 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0010418	pseudogene	Chr10:89601888-89602144 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0010745	pseudogene	Chr10:80902858-80903114 (-)
PWK/PhJ	MGP_PWKPhJ_G0010150	pseudogene	Chr10:77843062-77843318 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0009963	pseudogene	Chr10:79858255-79858511 (-)
WSB/EiJ	MGP_WSBEiJ_G0010315	pseudogene	Chr10:80938997-80939253 (-)

Homology

• Gene Tree
  Gm3828
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm3828
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000083808 (Evidence)
• NCBI Gene
  118567793

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000083808	Ensembl Gene Model | MGI Sequence Detail	257	C57BL/6J
transcript	ENSMUST00000121817	Ensembl | MGI Sequence Detail	257	Not Applicable

References

• Summaries
  All 9

  Phenotypes 5
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:74548 Benson KF, et al., Molecular Characterization of the Mouse In(10)17Rk Inversion and Identification of a Novel Muscle-Specific Gene at the Proximal Breakpoint. Genetics. 2002 Jan;160(1):279-87

TSS for Gm3828:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr98536	Chr10:80790552-80790573 (-)	-19 bp