Gm3830 Gene Detail

Summary

• Symbol
  Gm3830
• Name
  predicted gene 3830

• Feature Type
  lncRNA gene
• IDs
  MGI:3782002
  NCBI Gene: 100042408
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr8:105891219-105896999 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  136 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3782002	lncRNA gene	Chr8:105891219-105896999 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0007375	lincRNA gene	Chr8:107419841-107425446 (+)
A/J	MGP_AJ_G0007371	lincRNA gene	Chr8:103141385-103147812 (+)
AKR/J	MGP_AKRJ_G0007343	lincRNA gene	Chr8:106117242-106124431 (+)
BALB/cJ	MGP_BALBcJ_G0007349	lincRNA gene	Chr8:103314523-103320308 (+)
C3H/HeJ	MGP_C3HHeJ_G0007293	lincRNA gene	Chr8:106864320-106870029 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0007520	lincRNA gene	Chr8:111355334-111363798 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006714	lincRNA gene	Chr8:96297865-96303547 (+)
CAST/EiJ	MGP_CASTEiJ_G0007196	lincRNA gene	Chr8:106360935-106369886 (+)
CBA/J	MGP_CBAJ_G0007275	lincRNA gene	Chr8:114954392-114963191 (+)
DBA/2J	MGP_DBA2J_G0007298	lincRNA gene	Chr8:102487755-102493336 (+)
FVB/NJ	MGP_FVBNJ_G0007319	lincRNA gene	Chr8:101410548-101416411 (+)
LP/J	MGP_LPJ_G0007380	lincRNA gene	Chr8:107630268-107636783 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0007296	lincRNA gene	Chr8:118180725-118186508 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0007523	lincRNA gene	Chr8:106094753-106100473 (+)
PWK/PhJ	MGP_PWKPhJ_G0007137	lincRNA gene	Chr8:101871345-101877467 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0007044	lincRNA gene	Chr8:104769360-104775107 (+)
WSB/EiJ	MGP_WSBEiJ_G0007256	lincRNA gene	Chr8:106743892-106751456 (+)

Homology

• Gene Tree
  Gm3830
  

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000099465 (Evidence)
• NCBI Gene
  100042408

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000099465	Ensembl Gene Model | MGI Sequence Detail	5781	C57BL/6J
transcript	ENSMUST00000185540	Ensembl | MGI Sequence Detail	1715	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 6
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;