Mnd1-ps Pseudogene Detail

Summary

• Symbol
  Mnd1-ps
• Name
  Mnd1 retrotransposed pseudogene
• Synonyms
  Gm3833

• Feature Type
  pseudogene
• IDs
  MGI:3782005
  NCBI Gene: 100042415
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr14:12583144-12583747 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, 5.78 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  155 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3782005	pseudogene	Chr14:12582905-12585678 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0011070	pseudogene	Chr14:2235772-2236384 (+)
A/J	MGP_AJ_G0011068	pseudogene	Chr14:2191858-2192461 (+)
AKR/J	MGP_AKRJ_G0011025	pseudogene	Chr14:2205198-2205801 (+)
BALB/cJ	MGP_BALBcJ_G0011047	pseudogene	Chr14:2190302-2190905 (+)
C3H/HeJ	MGP_C3HHeJ_G0010943	pseudogene	Chr14:2232462-2233065 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0011324	pseudogene	Chr14:2310146-2310749 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0012400	pseudogene	Chr9:54541853-54542517 (+)
CAST/EiJ	MGP_CASTEiJ_G0013603	pseudogene	Chr9:57093056-57093678 (+)
CBA/J	MGP_CBAJ_G0010915	pseudogene	Chr14:2422499-2423102 (+)
DBA/2J	MGP_DBA2J_G0010962	pseudogene	Chr14:2158286-2158889 (+)
FVB/NJ	MGP_FVBNJ_G0010973	pseudogene	Chr14:2131554-2132157 (+)
LP/J	MGP_LPJ_G0011050	pseudogene	Chr14:2206370-2206982 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0010957	pseudogene	Chr14:2416679-2417282 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0011305	pseudogene	Chr14:2175745-2176348 (+)
PWK/PhJ	MGP_PWKPhJ_G0010857	pseudogene	Chr17:117-741 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0010457	pseudogene	Chr14:2266581-2267194 (+)
WSB/EiJ	MGP_WSBEiJ_G0010814	pseudogene	Chr14:2247551-2248154 (+)

Homology

• Gene Tree
  Mnd1-ps
  

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000089686 (Evidence)
• NCBI Gene
  100042415

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000089686	Ensembl Gene Model | MGI Sequence Detail	604	C57BL/6J
transcript	ENSMUST00000162462	Ensembl | MGI Sequence Detail	604	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 5
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Mnd1-ps:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr124255	Chr14:12583777-12583814 (-)	-49 bp