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Gapdhrt Gene Detail
Summary
  • Symbol
    Gapdhrt
  • Name
    glyceraldehyde-3-phosphate dehydrogenase, retrotransposed
  • Synonyms
    Gm3839
Location &
Maps
more
  • Sequence Map
    Chr14:11187822-11189022 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 14, 6.33 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    121 from dbSNP Build 142
  • Strain Annotations
    1
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3782011
 protein coding gene Chr14:11113047-11189038 (+)
129S1/SvImJ no annotation
A/J no annotation
AKR/J no annotation
BALB/cJ no annotation
C3H/HeJ no annotation
C57BL/6NJ no annotation
CAROLI/EiJ no annotation
CAST/EiJ no annotation
CBA/J no annotation
DBA/2J no annotation
FVB/NJ no annotation
LP/J no annotation
NOD/ShiLtJ no annotation
NZO/HlLtJ no annotation
PWK/PhJ no annotation
SPRET/EiJ no annotation
WSB/EiJ no annotation



Homology
more
  • Human Ortholog
    GAPDH, glyceraldehyde-3-phosphate dehydrogenase
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    GAPDH, glyceraldehyde-3-phosphate dehydrogenase
  • Synonyms
    G3PD, GAPD, HEL-S-162eP
  • Links
    NCBI Gene ID: 2597
    neXtProt AC: NX_P04406
    UniProt: P04406

  • Chr Location
    12p13.31; chr12:6534512-6538374 (+)  GRCh38
Human Diseases
more
  • Diseases
    1 with human GAPDH associations

Human Disease Mouse Models
      
IDs
Click on a disease name to see all genes associated with that disease.

Gene Ontology
(GO)
Classifications
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  • All GO Annotations
    43
  • GO References
    3
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
Sequences &
Gene Models
less
  • All Sequences
    7
  • RefSeq
    1
  • UniProt
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 100042427 NCBI Gene Model | MGI Sequence Detail 1201 C57BL/6J ±  kb
polypeptide S4R1W1 UniProt | EBI | MGI Sequence Detail 333 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • EC
    1.2.1.12
  • InterPro Domains
    IPR020830 Glyceraldehyde 3-phosphate dehydrogenase, active site
    IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain
    IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain
    IPR006424 Glyceraldehyde-3-phosphate dehydrogenase, type I
    IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family
    IPR036291 NAD(P)-binding domain superfamily
  • GlyGen
    S4R1W1 3 sites, 2 N-linked glycans (2 sites), 1 O-linked glycan (1 site)
Other
Accession IDs
less
MGI:7466662
References
more
  • Summaries
    All 8
    Gene Ontology 3
  • Earliest
    J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
  • Latest
    J:155856 The Gene Ontology Consortium, Automated transfer of experimentally-verified manual GO annotation data to mouse-rat orthologs. 2014;
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/05/2024
MGI 6.24 		The Jackson Laboratory