Gm3858 Gene Detail

Summary

• Symbol
  Gm3858
• Name
  predicted gene 3858
• Synonyms
  Gm1717, LOC382232

• Feature Type
  protein coding gene
• IDs
  MGI:3782030
  NCBI Gene: 100042465
• Alliance
  gene page

Location &
Maps

• Sequence Map
  ChrX:100861802-100865422 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, Syntenic
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  112 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3782030	protein coding gene	ChrX:100861790-100865583 (-)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Human Ortholog
  CXorf49, chromosome X open reading frame 49

• Vertebrate Orthologs
  2

Vertebrate Orthology Source

Alliance of Genome Resources

• Human Ortholog
  CXorf49, chromosome X open reading frame 49
  
• Synonyms
  CXorf49B
• Links
  HGNC:30891

  NCBI Gene ID: 100130361

  neXtProt AC: NX_A8MYA2

  UniProt: A8MYA2

  
  
• Chr Location
  Xq13.1; chrX:71714371-71718285 (-)  GRCh38

---

• Human Ortholog
  CXorf49B, chromosome X open reading frame 49B
  
• Synonyms
  CXorf49
• Links
  HGNC:34229

  NCBI Gene ID: 100132994

  neXtProt AC: NX_A8MYA2

  UniProt: A8MYA2

  
  
• Chr Location
  Xq13.1; chrX:71763349-71767204 (+)  GRCh38

---

• MGI Vertebrate Homology
  Gm3858 stringent orthology
  2 human;1 mouse
  
• HCOP
  vertebrate homology predictions: CXorf49, CXorf49B
• Gene Tree
  Gm3858
  

Gene Ontology
(GO)
Classifications

Expression

• cDNA Data
  1

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  10
• RefSeq
  3
• UniProt
  1

• Ensembl
  ENSMUSG00000118638 (Evidence)
• NCBI Gene
  100042465

Representative Sequences			Length	Strain/Species
genomic	100042465	NCBI Gene Model | MGI Sequence Detail	3621	C57BL/6J
transcript	XM_055019665	RefSeq | MGI Sequence Detail	1844	C57BL/6J
polypeptide	A0A668KLC8	UniProt | EBI | MGI Sequence Detail	542	Not Applicable

Protein
Information

• UniProt
  1 Sequence
• InterPro Domains
  IPR027822 Protein of unknown function DUF4641

Molecular
Reagents

• All nucleic 1

  cDNA 1

Other
Accession IDs

MGI:2686563

References

• Summaries
  All 9
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;